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gem-pasteur
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Integron_Finder
Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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[BUG] Error in find_attc_max function
#117
Ales-ibt
closed
2 months ago
5
How to classify Integrons?
#116
xdli009
closed
4 months ago
1
[FEAT] specify output folder or path
#115
susheelbhanu
closed
5 months ago
1
[BUG] Wrong coordinates in results
#114
fmalmeida
closed
2 months ago
13
[FEAT] Use the option --prot-file independently of the option --annot-parser
#113
LCoffion
opened
8 months ago
0
[FEAT] improve IF to work with gembase 2
#112
bneron
closed
6 months ago
0
[FEAT] Remove/Relax Matplotlib version requirement
#111
acarafat
opened
10 months ago
5
[HELP] In silico IntI1 qPCR assay don't match results IntegronFinder
#110
LauraVP1994
closed
11 months ago
10
[HELP] Different results in hits between multi-gbk and merged gbk on same sample?
#109
Svnipni
closed
11 months ago
2
AttributeError: module 'Bio.Seq' has no attribute 'IUPAC'
#108
EllBaum
closed
1 year ago
2
[BUG] underlay of /etc/localtime required more than 50 (87) bind mounts
#107
yegonzalezflores
closed
1 year ago
4
How to use --func-annot
#106
aslangabriel
closed
1 year ago
1
[HELP] How can I get the sequence of whole integron?
#105
Galib009
closed
1 year ago
3
[BUG] IF crashes with --gbk option in a specific caase
#104
eloilit
closed
2 months ago
3
[BUG] IF crashes on a multiple contigs file
#103
eloilit
closed
10 months ago
1
[HELP] Question: are gene cassettes of a integron all on the same strand?
#102
jiarong
closed
2 years ago
4
[HELP] Question: are the integrase (IntI) always on the opposite strand of gene cassettes?
#101
jiarong
closed
2 years ago
3
[FEAT] genbank or gff as input
#100
alexweisberg
opened
2 years ago
0
[BUG] IntegronFinder fails when there is a "space" in the path
#99
eloilit
closed
2 years ago
1
:pencil2: Eloilit patch issue 97 on CPU documentation
#98
eloilit
closed
2 years ago
0
[FEAT] Add documentation about CPU usage
#97
eloilit
closed
2 years ago
0
install Integron_Finder through conda
#96
danielarothschild
closed
2 years ago
0
Complete documentation for ARG
#95
jeanrjc
closed
2 years ago
1
IntegronFinder does not pass unitary test "test_main_outdir_exists" (test_merge.TestMain)
#94
eloilit
closed
2 years ago
0
Issue with colorlog logging
#93
alexweisberg
closed
2 years ago
1
ValueError: attempt to get argmin of an empty sequence
#92
danyu-uofa
closed
3 years ago
4
IF give different results depending installation
#91
bneron
closed
3 years ago
2
Integron_Finder bogs down server's I/O when ran on metagenomes with ~million contigs
#90
JuntaoZhong
opened
3 years ago
3
update hmmsearch command line and profile
#89
bneron
closed
3 years ago
0
IntegronFinder should not run twice over the the edge of the replicon
#88
jeanrjc
closed
2 years ago
0
Help me understanding the output of IF with a multi-fasta file
#87
bramvandijk88
closed
3 years ago
2
Fatal error: Exit code 127 ()
#86
IustinBilavschi
closed
3 years ago
1
End location (191284) must be greater than or equal to start location (271412)
#85
erichy91
closed
3 years ago
6
Keep attC sites even if the evalue change with local_max
#84
jeanrjc
closed
3 years ago
0
program not work for Staphylococcus aureus
#83
wmbio
closed
3 years ago
1
Problem installing integron_finder via bioconda
#82
evolarjun
closed
3 years ago
5
some major and common problems
#81
hongyuan-zheng
closed
3 years ago
2
error on calling --gembases option
#80
cachapuz2001
closed
3 years ago
1
Error related to prodigal: RuntimeError("{0} failed returncode = {1}".format(prodigal_cmd, returncode))
#79
sasonbol
closed
3 years ago
16
AttributeError: module 'Bio.Seq' has no attribute 'IUPAC'
#78
deoliveiralab
closed
3 years ago
4
conda install causes pandas.io.common ImportError
#77
nebfield
closed
3 years ago
2
Error running Singularity
#76
ramadatta
closed
2 years ago
4
Integron classes 1,2,3
#75
koopkaup
closed
4 years ago
1
Installing from pip not working
#74
leaemiliepradier
closed
4 years ago
3
go_left = (full_element[full_element.type_elt == "attC"].pos_beg.values[0] - df_max.pos_end.values[0]: index 0 is out of bounds for axis 0 with size 0
#73
vbrover
closed
3 years ago
6
"integron_finder --local_max --func_annot mysequences.fst" should be "integron_finder --local-max --func-annot mysequences.fst"
#72
vbrover
closed
4 years ago
0
IndexError attc.py
#71
jfourquet2
closed
3 years ago
4
Topology issues
#70
jeanrjc
closed
3 years ago
2
problem with overlapping/near identical attC sites
#69
jeanrjc
closed
2 years ago
6
in summary output, add the size of contig
#68
jeanrjc
closed
3 years ago
0
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