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gem-pasteur
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Integron_Finder
Bioinformatics tool to find integrons in bacterial genomes
GNU General Public License v3.0
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ID_integron should not be in .summary file
#67
jeanrjc
closed
4 years ago
1
summary files should be created when no integron is found
#66
jeanrjc
closed
4 years ago
2
bug in .integrons output
#65
jeanrjc
closed
4 years ago
0
Cannot install
#64
vbrover
closed
5 years ago
3
Trouble installing integron_finder using pip install
#63
aaron-bio
closed
5 years ago
1
errors
#62
mdtorohernando
closed
5 years ago
2
I cannot find intergron_Finder in bioconda
#61
glichtenstein
closed
5 years ago
4
preparation problems
#60
aslangabriel
closed
5 years ago
11
Added newlines
#59
g1o
closed
5 years ago
2
Runtime error on draft assemblies
#58
lowandrew
closed
5 years ago
1
installing Integron_Finderv2 on conda
#57
mhyleung
closed
5 years ago
2
Invalid characters
#56
pbravakos
closed
5 years ago
4
Prediction over sequence start with --linear
#55
johrollin
closed
2 years ago
4
add github page for khillion
#54
khillion
closed
6 years ago
1
Small change to keep it up with the matplot version
#53
g1o
closed
6 years ago
1
-vv does not work
#52
bneron
closed
6 years ago
0
Small change to check pipeline
#51
aperrin
closed
6 years ago
0
Complete Documentation with all new options and changes
#50
jeanrjc
closed
5 years ago
0
log file
#49
asetGem
closed
6 years ago
0
Add function parsing attC sites
#48
asetGem
closed
6 years ago
1
stdout/stderr management
#47
asetGem
closed
6 years ago
3
Diversify installation
#46
asetGem
closed
6 years ago
0
Add threshold of number of attC to keep a CALIN
#45
asetGem
closed
6 years ago
1
Parallelisation
#44
asetGem
closed
6 years ago
1
Circularity with multi-fasta input
#43
asetGem
closed
6 years ago
3
Improve error handling
#42
asetGem
closed
6 years ago
4
Handle multi-fasta input files
#41
asetGem
closed
6 years ago
1
Modify default outputs
#40
asetGem
closed
6 years ago
1
Add information on running tests in doc
#39
asetGem
closed
6 years ago
1
add unit test for all Integron methods
#38
bneron
closed
6 years ago
0
remove accent for XML compatibility
#37
khillion
closed
7 years ago
0
Find integrons in a multiple sequence fasta file
#36
koopkaup
closed
6 years ago
2
help --gembase
#35
johrollin
closed
2 years ago
5
error python-pandas-0.19
#34
johrollin
closed
7 years ago
2
add unit test for get_version_message
#33
bneron
closed
6 years ago
0
add unit test for scan_hmm_bank
#32
bneron
closed
6 years ago
0
find unit test to to_gbk
#31
bneron
closed
6 years ago
0
add unit test for read_infernal
#30
bneron
closed
6 years ago
0
add unit test for read_hmm
#29
bneron
closed
6 years ago
0
add unit test for func_annot
#28
bneron
closed
6 years ago
0
add unit test for func_annot
#27
bneron
closed
7 years ago
1
add unit test for find_integrase
#26
bneron
closed
6 years ago
0
add unit test for find_attc
#25
bneron
closed
6 years ago
0
add unit test for local_max
#24
bneron
closed
6 years ago
0
add unit test for expand
#23
bneron
closed
6 years ago
0
add unit test for find_attc_max
#22
bneron
closed
6 years ago
0
add unit test for find_integron
#21
bneron
closed
6 years ago
0
add unit test for search_attc
#20
bneron
closed
6 years ago
0
Add documentation for Galaxy
#19
khillion
closed
7 years ago
3
fillna="na" error if pandas version 0.19.0, solved by downgrading pandas to 0.18.0
#18
SwapnilDoijad
closed
8 years ago
2
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