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https://mp.weixin.qq.com/s/YLbr5P3OJhFcLhkSZ465Dg
ixxmu updated
2 years ago
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I have 6 samples from Whole-genome bisulfite Illumina PE sequencing. Each file has 60-80 million reads. Two samples aligned well (70% and 72%). The other four samples had very few alignments (less tha…
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This probably warrants a little write up.
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I am currently trying to install methpipe on to a ubuntu 16 computer that has both Zlib and HTSlib installed. When I try to make in the build directory I get this error:
(base) computer@lab:~/Documen…
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Unless there is a way to serve a directory, we will need to traverse the asset directory and save their contents in a nested data structure, rather than a flat array of strings before saving as JSON.
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Hi Peng,
Glad to see a new version of deepsignal !
I have some questions:
* Did you already do a comparison of both tools (deepsignal vs deepsignal2) ? Did you use the same dataset to build the …
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I am trying to trim WGBS data using TrimGalore but I observed that it is unable to trim all occurrences of the Illumina adapter (AGATCGGAAGAGC ) with default parameters. FastQC after trimming shows Tr…
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Hi!
I am performing alignment of RRBS data (single-end sequencing) using bismark and bowtie2 and I have a question about the messages it is outputting.
Is this an error I should consider or can th…
ghost updated
3 years ago
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Hi,
I am trying to run ARPEGGIO to compare the DNA methylation pattern between parental lines and F1 hybrids. When I ran the snakemake command I encountered the following warnings and stopped imme…
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Hello @jfong1123 ,
I'm analyzing a bisulfite sequencing data with DXM, but I encountered an error while using the `-f/--fracs` argument in the function `dxm_solveMethylation`. Here is the test code…