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Attaching an example session:
Description: It is a hg19 genome brolywser with some human data tracks. There is a hg19-to-mm9 genome comparison annotation track below which I had some mouse data.…
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-- Fedora 26
-- Boost version: 1.60.0
-- htslib & samtools version: 1.5
```
$ ctest --output-on-failure -R Unit.dng::regions
Test project /home/jgar/workspace/denovogear/build
Start 27: Un…
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write a PB_REF for the ones ortholog predictions don't have a specific publication to cite
....we should use use my old book chapter which describes in detail how the orthology calls are mad…
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At 507 MB, the repo is too big, at least much bigger than what it should be. Checked out, all files are 9 MB (excluding screencasts).
There are at least 164 MB worth of screencasts (in a format unk…
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- Repository: https://github.com/klarakaleb/roma
- [x] I understand that by submitting my package to _Bioconductor_,
the package source and all review commentary are visible to the
general pu…
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I have rerun the annotations pipeline on the newest annotations.
There are some new changes in the recent ensembl releases: Whereas the GTF still has "ENSPXXX" notation, the .pep. file and the .cdna.…
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I would like to visualize the gff3 outputs using the Apollo Genome Viewer and attempted to convert the files using the flatfile-to-json.pl script from JBrowse.
Unfortunately, this does not work pr…
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attempting to import in yaml from Angelman live site (attached, renamed .txt instead of .yaml as gh won't accept .yaml), receive this error:
Note, there is no GeneratedQuestionnaireForang Form conf…
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Dear igv team, thanks for such wonderful visualization tools for the genomics and epigenomics field. I am writing to suggest a modified version for the comparative genomics purpose. To my knowledge, …