ultimatesource denovogear issues

ultimatesource / denovogear

A program to detect denovo-variants using next-generation sequencing data.

http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html

GNU General Public License v3.0

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issues

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Applying Plugin trio-dnm2 on trio vcf file

#316 HM-Anas opened 1 year ago
0
Any suggestion for dnm results filter?

#315 bucongfan opened 2 years ago
0
No outputs

#314 Lin-Yuying closed 2 years ago
4
Denovogear and DenovogearBB

#313 StellaXia opened 3 years ago
1
Why 414 and other question about DNG math

#312 pd3 opened 4 years ago
2
bam file for dng-phaser

#311 mariliascliar closed 4 years ago
1
Fix not being able to find boost libraries with recent CMAKE.

#310 reedacartwright closed 4 years ago
0
fixed comparison error

#309 noguchi-k opened 4 years ago
0
Having trouble getting non-empty output

#308 exeter-matthew-wakeling closed 4 years ago
1
Having trouble getting non-empty output

#307 exeter-matthew-wakeling closed 4 years ago
1
Error 2 during compilation

#306 stanedav opened 4 years ago
1
Allele frequency, Allele Depth & Reference Depth

#305 anushishah opened 4 years ago
0
"make testdata" fails, /denovogear/build/testdata.tar.gz hash doesn't match

#304 MurphyDavid opened 5 years ago
0
typo in readme.md

#303 adamjorr closed 5 years ago
0
[E::bcf_hdr_add_sample] Duplicated sample name '.' Aborted (core dumped)

#302 Saranya-Balachandran closed 5 years ago
5
segfault on calls with larger alternates

#301 jwhitney31337 opened 5 years ago
1
snp or indel?

#300 tatianaliu closed 5 years ago
0
Trio with Father, Sister, Brother -- getting missing trio messages -- is this normal?

#299 saliksyed closed 5 years ago
0
dng phaser for indels

#298 sjin09 closed 5 years ago
1
GATK vcf as input for dng-dnm

#297 bthiruv closed 5 years ago
7
vcf input but prompted me bcf parsing error

#296 shannjiang closed 5 years ago
6
Fix memory leak and undefined value assignment

#295 jgarciamesa closed 5 years ago
1
denovogear no DNM found on CentOS 7 (Core)

#294 shannjiang closed 5 years ago
6
sample size for each single run of denovogear

#293 shannjiang closed 5 years ago
4
Fix Compilling error with recent boost libraries

#292 reedacartwright closed 5 years ago
0
VCF Output v4.3

#291 reedacartwright opened 5 years ago
0
Aborted (core dumped) calling trio buffer overflow

#290 DataOmics76 closed 5 years ago
4
problems to install

#289 DataOmics76 closed 5 years ago
7
buffer overflow detected ***: /usr/local/bin/../libexec/denovogear/dng-dnm terminated

#288 vgastaldi closed 4 years ago
4
why this is not picked up as a de-novo variant

#287 jielab closed 6 years ago
4
dng call --model=autosomal does not return results

#286 jielab closed 6 years ago
4
error when installing with "make -j4"

#285 zhangjianruwang closed 6 years ago
0
why the same genetic data could go both ways

#284 jielab closed 6 years ago
1
vcf output in the latest development version

#283 vsvinti closed 6 years ago
5
modified for error proofing

#282 AisaacO closed 6 years ago
3
even the official testing data does not work

#281 jielab closed 6 years ago
2
How could "de-novo" mutation found from a binary coded 0/1 VCF file

#280 jielab closed 6 years ago
2
Total number of Paired sample sites interrogated: 0

#279 jielab closed 6 years ago
7
Fix an off-by-one error in dng-dnm.

#278 reedacartwright closed 6 years ago
1
Make integration tests path more robust

#277 jgarciamesa closed 6 years ago
1
Improve pedigree simplification

#276 reedacartwright opened 6 years ago
0
Support Selfing

#275 reedacartwright opened 6 years ago
0
Move BAM support from call to pileup.

#274 reedacartwright opened 6 years ago
0
Feature/pedng

#273 reedacartwright closed 6 years ago
0
Remove support for AD/TAD files

#272 reedacartwright closed 6 years ago
0
Running DNG in parallel

#271 aschoenr closed 6 years ago
34
Support Producing vcf.gz files

#270 reedacartwright closed 6 years ago
0
Add functionality to output graph to file

#269 anderspitman opened 6 years ago
5
Update Probability model, Call Variants, and update reported stats

#268 reedacartwright closed 6 years ago
0
Compiling DeNovoGear on CentOS 6.6

#267 aschoenr closed 6 years ago
3