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denovogear
A program to detect denovo-variants using next-generation sequencing data.
http://www.nature.com/nmeth/journal/v10/n10/full/nmeth.2611.html
GNU General Public License v3.0
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Total number of SNP sites interrogated: 0
#266
jielab
closed
6 years ago
16
dng dnm VCF output : off-by-one?
#265
MikeHala
closed
6 years ago
5
Add support for clang-format and clang-tidy
#264
reedacartwright
closed
6 years ago
0
Fix moving io::File with GCC 4.8 and 4.9
#263
reedacartwright
closed
6 years ago
1
Problem during the make step of the installation
#262
Antoine-Fav
closed
6 years ago
2
Feature/get numeric
#261
jgarciamesa
closed
6 years ago
0
BCF: incorrect number of fields (6 != 5) at 927143687:4074044
#260
zhangjianruwang
closed
6 years ago
4
New Optimization Script
#259
reedacartwright
closed
6 years ago
0
Support reading stdin
#258
reedacartwright
closed
6 years ago
1
Fix GenotypePrior to support parameter estimation
#257
reedacartwright
closed
6 years ago
0
New change log
#256
jgarciamesa
closed
6 years ago
2
Bioconda Recipe
#255
reedacartwright
closed
6 years ago
18
Add Treecall version 2.0
#254
reedacartwright
closed
6 years ago
1
Update HTSLIB dependency and fix missing include
#253
jgarciamesa
closed
6 years ago
7
Modify the model in dng-call to be a k-alleles model
#252
reedacartwright
closed
6 years ago
0
Fix memory leak related to BCFtools functions
#251
jgarciamesa
closed
6 years ago
0
SegFault in dng dnm
#250
reedacartwright
closed
6 years ago
5
DenovoGear v1.1.1 run didn't call any denovo insertions
#249
simonzzc034
closed
6 years ago
20
New TAD and AD Formats
#248
reedacartwright
closed
6 years ago
1
Optimize Region Handling
#247
reedacartwright
opened
6 years ago
0
New interface for processing regions
#246
reedacartwright
closed
6 years ago
3
Add Unit test for cigar
#245
jgarciamesa
closed
6 years ago
1
Reject Aligned Reads flagged as supplemental
#244
reedacartwright
closed
6 years ago
1
Initialize All Germline Nodes and add Test Cases
#243
reedacartwright
closed
6 years ago
1
Added integration test for dng Loglike
#242
jgarciamesa
closed
6 years ago
1
Added library Unit test
#241
jgarciamesa
closed
6 years ago
1
Testing the Handling of missing data in VCFs and Fix Bugs
#240
reedacartwright
closed
6 years ago
2
Handle BCF missing data in AD field
#239
jgarciamesa
closed
6 years ago
1
Improved check for HTSLIB version on Unit test
#238
jgarciamesa
closed
6 years ago
2
Unit test dng::regions fails in Fedora 26
#237
jgarciamesa
closed
6 years ago
3
Support GL and PL fields when processing BCF
#236
reedacartwright
opened
7 years ago
1
Missing data in AD fields
#235
reedacartwright
closed
6 years ago
0
[dng-dnm][1.1.1 develop] Consumes all available RAM then its get killed by system
#234
stanedav
closed
6 years ago
10
Update Relationship Graph Unit Tests
#233
reedacartwright
closed
7 years ago
1
Fix the construction of haploid priors
#232
reedacartwright
closed
7 years ago
1
Fixed issue 209, dng-loglike segfaults on bam
#231
jgarciamesa
closed
7 years ago
3
Fix crashes caused by empty pedigrees
#230
reedacartwright
closed
7 years ago
1
Fix loss-of-precision causing MU1P > 1.0.
#229
reedacartwright
closed
7 years ago
2
Feature/PeelingUnitTests
#228
reedacartwright
closed
7 years ago
1
Add VCF/BCF input support for dng-loglike
#227
reedacartwright
closed
7 years ago
1
Simplify Mutation Rate UI
#226
reedacartwright
closed
7 years ago
1
Feature: Simplify Genotype Likelihoods
#225
reedacartwright
closed
7 years ago
1
Fix issue #151, dng-dnm assumes DP is zero and improve BCF parsing er…
#224
jgarciamesa
closed
7 years ago
4
Visibility of dng develop branch
#223
AisaacO
closed
6 years ago
0
Fix issue #218, permission issue with dng help
#222
jgarciamesa
closed
7 years ago
3
Feature/update unit test
#221
reedacartwright
closed
7 years ago
2
Feature/inheritance model
#220
reedacartwright
closed
7 years ago
4
dng-dnm error when using GATK vcf: "PL field is missing, unable to process records. Exiting!"
#219
stanedav
closed
7 years ago
8
Permission issue with dng
#218
reedacartwright
closed
7 years ago
1
DNG Call PL field
#217
stevenhwu
closed
7 years ago
2
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