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@timosachsenberg @mwalzer We are processing a submission in PRIDE and the reference between the mzIndetML and mzML is wrong. It would be great to produce a python script to fix it. Example in this url…
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@germa Apologies if I missed it somewhere - it's not obvious if there is a release of the validator available for developers. It would be good to post this on the front page of the mzIdentML GitHub, o…
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Currently it is possible to include 'result' files in a 'partial' submission. This is not allowed and should be prevented.
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Hi,
Please excuse if this is not a bug!
Im assuming the number of psms in an msnid object should sum to the spectral counts at the peptide level?
Here is an example from my data that I find confusin…
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Hi,
[210716PSbug report.txt](https://github.com/compomics/peptide-shaker/files/375882/210716PSbug.report.txt)
I'm trying to import results searched by Morpheus into peptideshaker, without much succes…
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I get a reproducible crash of the validator (1.4.18) when trying to validate the attached file:[pia_testMzIdentML.mzId.gz](https://github.com/HUPO-PSI/mzIdentML/files/315992/pia_testMzIdentML.mzId.gz
…
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ERROR: cvParam product ion intensity should have units, but it does not!
ERROR: cvParam product ion m/z should have units, but it does not!
WARNING: MS:1001062 should be 'Mascot MGF format' instead of…
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When running the current validator on the PeptideShaker mzid 1.2 example file I now get the following error:
```
Rule ID: PeptideLevelStatsObjectRule
Level: ERROR
Context(/MzIdentML/DataC…
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ERROR: cvParam local FDR should have units, but it does not!
ERROR: cvParam q-value for peptides should have units, but it does not!
(the previous two may be errors in the CV itself?)
WARNING: MS:100…
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I just wanted to add a cross-linker to the obo-file and when trying to check it with obo-edit I found, that it ignores everything in the name-field that comes after an exclamation mark.
Currently i h…