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Using phyloseq rarefaction function, the samples containing less reads than the cut-off are dropped.
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Removed parallelization in version 1.40, because current implementation was not thread safe. To reintroduce the processors option we will need to rework the division of work between the processors or …
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the `facet_wrap()`'ed plots on the rarefaction page are quite small as @madcowen pointed out. Will think of alternatives- perhaps just no faceting
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use bin/count_table_minmax_reads.py to replace bash code in processes alpha_rarefaction and diversity_core
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This refers to the example with the entropy-violating rarefaction imposed in the dam-break problem.
The text says that that the 2-characteristics cross within the 2-rarefaction, but something has b…
ketch updated
6 years ago
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### Expected behaviour
1) enable the encryption apps, the files get encrypted
2) disable the encryption apps the banner "need to decrypt your files" appears
3) enter my password hit "decrypt all" the…
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I'm having some issues getting SourceTracker2 to work, which is odd because it worked just fine a few weeks ago. The only difference is that I reinstalled it so I could use the --per_sink_feature_assi…
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Hi,
I am able to run rtk with 16S rRNA OTU abundance as follows:
```
/Users/sen/git_repos/rtk/rtk rarefaction \
-i ~/exp/ynp/results/plt_CRAnoxy/Anoxy.s3 \
-o ~/exp/ynp/results/plt_CRAnoxy/…
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In GitLab by @magr0763 on Sep 28, 2018, 08:45
After the most recent update and pull on 09/24/18, it appears that you are now able to "train" the model in the bidir_old module, or rather calculate wha…
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make nice looking log with stuff written currently to stdout ("echo" etc.)