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How to run chloroExtractor while providing reference genome for assembly? I tried run it with Illumina paired end data it gave fasta file with more than one contigs. The length for those contigs is qu…
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New file on step wise actions for the Chlamy plastidial genome analysis!
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To get an overview of what has been done:
- number of genes (download GFF - downloads the predicted set)
- number of genes people tried curation (download GFF)
- number of genes that passed autocheck
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yeban updated
9 years ago
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Dear Developers,
I have a doubt, does this program generate reads by assuming a circular genome?
If not, is there a chance to make it possible?
Greetings.
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The use case described in #57 will be used to identify requirements on the interfaces between the VP[^1] and the connected resources, on the data objects that are communicated, and the services that p…
mroos updated
3 months ago
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Hello everyone!
I am trying to annotate a genome using BRAKER3. I have already done the previous steps (like mapping the RNA-seq to the genome using STAR), but now I'm encountering several problems…
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back u…
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# Summary
Users cannot view reads. The IGV panel opens, but the tracks do not load. Inspecting the browser console reveals that an HTTP request for reference files returns with a 403 error.
The HT…
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Greetings I'm running a syteny analysis on multiple genomes.
#Context: I'm studying the overall synteny among multiple assemblies of a eukaryotic organism, First I took 1 assembly of each species an…
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S:E154Q has been samples more than 1000X with most of samples belonging to B.1.1.7/Q.1
It has now appeared on MC.16 backbone
MC.16 (KP.3.1.1 + G2890A) >> S:E154Q (G22022C)
Query: G2890A,G22022…