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wurmlab
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afra
Genome Annotation for the Masses
http://afra.sbcs.qmul.ac.uk
Apache License 2.0
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Fix when exon is resized beyond translationStart
#117
aniarya82
opened
7 years ago
0
Additions to test suite
#116
aniarya82
closed
7 years ago
0
Test suite modifications
#115
aniarya82
closed
7 years ago
0
How do users communicate problems?
#114
yannickwurm
opened
8 years ago
0
Appropriate licensing and copy right.
#113
monicacecilia
opened
8 years ago
2
Ability to hide features that extend beyond a specified window
#112
ilevantis
opened
9 years ago
2
Info popup from track labels.
#111
yeban
opened
9 years ago
1
A way to flip your view so that the right to left strand becomes the left to right strand.
#110
yeban
opened
9 years ago
0
typo in the readme
#109
epaule
closed
9 years ago
1
Genome Dashboard
#108
yeban
opened
9 years ago
1
Ability to add comments before submitting curation.
#107
yeban
opened
9 years ago
0
Ability to skip a task.
#106
yeban
opened
9 years ago
0
Reading frame is not correctly highlighted.
#105
yeban
opened
9 years ago
1
If hitting 'Done' fails (say if server is down), user is still shown the "Thank you" modal
#104
yeban
opened
9 years ago
0
Add functionality for extending to downstream/upstream acceptor/donor splice sites.
#103
yeban
opened
9 years ago
0
Add functionality to set exon boundaries to one from a track of evidence.
#102
yeban
opened
9 years ago
0
Features in all tracks need a context menu.
#101
yeban
opened
9 years ago
0
If more than one longest ORF, 'use longest orf' menu option could switch b/w them.
#100
yeban
opened
9 years ago
0
Left of toolbar should mention "curate - <name of gene model>"
#99
yeban
opened
9 years ago
0
Draw a "Drop gene model here" marker around edit track.
#98
yeban
opened
9 years ago
0
Add keyboard shortcuts.
#97
yeban
opened
9 years ago
0
See if Cmd-z/Cmd-Shift-z or Ctrl-z/Ctrl-y can be used for undo redo.
#96
yeban
opened
9 years ago
0
Ensure context menu can be opened via keyboard.
#95
yeban
opened
9 years ago
1
If an annotation is selected, Shift + arrow keys should select next feature.
#94
yeban
opened
9 years ago
0
Ability to annotate readthrough stop signals.
#93
yeban
opened
9 years ago
0
Editing will fail if strand not set.
#92
yeban
opened
9 years ago
0
Sync edits with server
#91
yeban
opened
9 years ago
0
createTranscript Enhancement
#90
hargup
opened
9 years ago
2
Set up a code coverage tool
#89
hargup
opened
9 years ago
1
Implement getSpliceSites
#88
hargup
closed
9 years ago
1
Add js tests to travis build
#87
hargup
opened
9 years ago
1
merge transcript fails if none of the input transcripts contain any CDS
#86
hargup
closed
9 years ago
2
Fix merge transcripts
#85
hargup
closed
9 years ago
1
Migrate older tests to Jasmine 2.0
#84
hargup
closed
7 years ago
6
Basic testing framework for EditTrack
#83
hargup
closed
9 years ago
2
`mergeTranscript` duplicates sub-features if single transcript is passed to multiple times.
#82
hargup
closed
9 years ago
3
Handle case where an invalid coordinate is passed to `transcriptToCDNA` or `CDNAToTranscript`
#81
hargup
opened
9 years ago
1
[RFC] Make sidebar flatish in appearance.
#80
raivivek
closed
9 years ago
4
Add a page unload warning message.
#79
raivivek
closed
2 years ago
3
Replace JB's sequence search box with Bootstrap modal.
#78
raivivek
closed
9 years ago
0
Change Track Label style, Reposition toolbar
#77
raivivek
closed
9 years ago
0
Edit Track should resize when genes are removed from the track
#76
raivivek
closed
3 years ago
0
Make tracks collapsible in nature, increase sidebar z-index
#75
raivivek
closed
9 years ago
0
Factor out code to export and import SimpleFeature
#74
hargup
closed
9 years ago
2
Fix feature overlapping sidebar when dragged or resized.
#73
raivivek
closed
9 years ago
0
Implement Edit Track synchronization between tabs/windows.
#72
raivivek
closed
9 years ago
2
[WIP] Implement Edit Track synchronization between tabs/windows.
#71
raivivek
closed
9 years ago
0
[WIP] Test Suit for Editing Functionality
#70
hargup
closed
9 years ago
5
Rake should fail if node is not found
#69
raivivek
closed
9 years ago
0
Context menu items are clickable despite being disabled.
#68
hargup
opened
9 years ago
2
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