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wurmlab
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afra
Genome Annotation for the Masses
http://afra.sbcs.qmul.ac.uk
Apache License 2.0
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export submissions to GFF3 format
#67
hargup
closed
9 years ago
8
Re-factor Undo/Redo functionality
#66
hargup
closed
9 years ago
3
Edit track doesn't accept drag-n-dropped transcript if transcript stretches beyond visible region.
#65
hargup
closed
9 years ago
1
Resize exon is very slow when zoomed to base-pair level
#64
hargup
opened
9 years ago
1
Highlight Reading Frame
#63
hargup
closed
9 years ago
2
Undo / redo stack is a potential memory leak
#62
yeban
closed
9 years ago
0
Unit tests for annotation editing functionality
#61
hargup
opened
9 years ago
3
Make the CodonTable.START_CODON an array
#60
hargup
closed
9 years ago
1
Allow alternate translation table
#59
hargup
opened
9 years ago
0
allow non canonical stop codons in setORF
#58
hargup
closed
9 years ago
1
Implement multiple level of undo and redo
#57
hargup
closed
9 years ago
1
Transcript that is being dragged or the exon that is being resized overlaps the sidebar
#56
hargup
closed
9 years ago
4
snap to nucleotide boundaries when resizing exon
#55
hargup
closed
9 years ago
1
search track empty after zooming in
#54
EmelineFavreau
closed
9 years ago
2
Hightlight edge of resizing exon by Red Vertical Line
#53
hargup
closed
9 years ago
2
Error message when searching reference sequence
#52
EmelineFavreau
closed
9 years ago
1
automatic display of read number still visible when RNASeq track not visible
#51
EmelineFavreau
opened
9 years ago
0
Rightclick on exon 2 while resizing exon 1
#50
yannickwurm
opened
9 years ago
0
gene model become non-editable after a glitch while zooming out
#49
EmelineFavreau
closed
9 years ago
2
Sometimes pointer does not change into arrow when trying to resize exon
#48
EmelineFavreau
closed
9 years ago
1
sort Dir['routes/*.rb']
#47
hargup
closed
9 years ago
1
Pointer position is inconsistent with the exon being dragged to the edit track
#46
hargup
closed
9 years ago
0
highlight reading frame
#45
yeban
closed
9 years ago
0
snap to nucleotide boundaries when resizing exon and zoomed in to base pair level
#44
yeban
closed
9 years ago
0
Add a new Dockerfile
#43
sa1
closed
9 years ago
1
Dockerfile building - Ruby 2.0 vs 2.1
#42
robsyme
closed
9 years ago
3
Non Deterministic order of Dir['routes/*.rb'] raises Error 401
#41
hargup
closed
9 years ago
4
improved fire ant description
#40
yannickwurm
closed
9 years ago
1
Issues installing using Docker
#39
mdshw5
closed
9 years ago
9
added some credits
#38
yannickwurm
closed
10 years ago
1
Adds CI with Drone and Docker
#37
bmpvieira
closed
10 years ago
1
A single exon is displaced horizontally when dragging.
#36
yeban
closed
10 years ago
0
It takes a few seconds before spinner is activated on afra.sbcs.
#35
yeban
opened
10 years ago
1
Spinner should be accompanied with text saying "Afra is loading ...
#34
yeban
closed
10 years ago
0
Spinner should be put on a background overlay.
#33
yeban
closed
10 years ago
0
resize exons - edge matching
#32
yannickwurm
closed
9 years ago
6
Merge annotations: if one is dragged over another, should merge like in WA
#31
yannickwurm
closed
10 years ago
1
Display of incorrect Splice sites
#30
yannickwurm
closed
10 years ago
1
WA?
#29
yannickwurm
closed
10 years ago
3
basic editor synchronization
#28
yannickwurm
closed
9 years ago
2
context menu missing
#27
yannickwurm
closed
10 years ago
4
gene predictions being edited jump around
#26
yannickwurm
closed
10 years ago
0
Contribute more should send farther
#25
yannickwurm
closed
10 years ago
0
performance degradation
#24
yannickwurm
opened
10 years ago
4
simple-feature shows many many copies of what a previous user submitted
#23
yannickwurm
closed
10 years ago
2
no vertical scroll bar
#22
yannickwurm
opened
10 years ago
0
nucleotides in different transcripts
#21
yannickwurm
closed
10 years ago
0
edit track should be above others.
#20
yannickwurm
closed
10 years ago
0
nucleotides within gene predictions
#19
yannickwurm
closed
10 years ago
3
splice sites
#18
yannickwurm
closed
10 years ago
0
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