wurmlab afra issues - Githubissues

wurmlab / afra

Genome Annotation for the Masses

http://afra.sbcs.qmul.ac.uk

Apache License 2.0

36 stars 21 forks source link

issues

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Fix when exon is resized beyond translationStart

#117 aniarya82 opened 7 years ago
0
Additions to test suite

#116 aniarya82 closed 7 years ago
0
Test suite modifications

#115 aniarya82 closed 7 years ago
0
How do users communicate problems?

#114 yannickwurm opened 9 years ago
0
Appropriate licensing and copy right.

#113 monicacecilia opened 9 years ago
2
Ability to hide features that extend beyond a specified window

#112 ilevantis opened 9 years ago
2
Info popup from track labels.

#111 yeban opened 9 years ago
1
A way to flip your view so that the right to left strand becomes the left to right strand.

#110 yeban opened 9 years ago
0
typo in the readme

#109 epaule closed 9 years ago
1
Genome Dashboard

#108 yeban opened 9 years ago
1
Ability to add comments before submitting curation.

#107 yeban opened 9 years ago
0
Ability to skip a task.

#106 yeban opened 9 years ago
0
Reading frame is not correctly highlighted.

#105 yeban opened 9 years ago
1
If hitting 'Done' fails (say if server is down), user is still shown the "Thank you" modal

#104 yeban opened 9 years ago
0
Add functionality for extending to downstream/upstream acceptor/donor splice sites.

#103 yeban opened 9 years ago
0
Add functionality to set exon boundaries to one from a track of evidence.

#102 yeban opened 9 years ago
0
Features in all tracks need a context menu.

#101 yeban opened 9 years ago
0
If more than one longest ORF, 'use longest orf' menu option could switch b/w them.

#100 yeban opened 9 years ago
0
Left of toolbar should mention "curate - <name of gene model>"

#99 yeban opened 9 years ago
0
Draw a "Drop gene model here" marker around edit track.

#98 yeban opened 9 years ago
0
Add keyboard shortcuts.

#97 yeban opened 9 years ago
0
See if Cmd-z/Cmd-Shift-z or Ctrl-z/Ctrl-y can be used for undo redo.

#96 yeban opened 9 years ago
0
Ensure context menu can be opened via keyboard.

#95 yeban opened 9 years ago
1
If an annotation is selected, Shift + arrow keys should select next feature.

#94 yeban opened 9 years ago
0
Ability to annotate readthrough stop signals.

#93 yeban opened 9 years ago
0
Editing will fail if strand not set.

#92 yeban opened 9 years ago
0
Sync edits with server

#91 yeban opened 9 years ago
0
createTranscript Enhancement

#90 hargup opened 9 years ago
2
Set up a code coverage tool

#89 hargup opened 9 years ago
1
Implement getSpliceSites

#88 hargup closed 9 years ago
1
Add js tests to travis build

#87 hargup opened 9 years ago
1
merge transcript fails if none of the input transcripts contain any CDS

#86 hargup closed 9 years ago
2
Fix merge transcripts

#85 hargup closed 9 years ago
1
Migrate older tests to Jasmine 2.0

#84 hargup closed 7 years ago
6
Basic testing framework for EditTrack

#83 hargup closed 9 years ago
2
`mergeTranscript` duplicates sub-features if single transcript is passed to multiple times.

#82 hargup closed 9 years ago
3
Handle case where an invalid coordinate is passed to `transcriptToCDNA` or `CDNAToTranscript`

#81 hargup opened 9 years ago
1
[RFC] Make sidebar flatish in appearance.

#80 raivivek closed 9 years ago
4
Add a page unload warning message.

#79 raivivek closed 2 years ago
3
Replace JB's sequence search box with Bootstrap modal.

#78 raivivek closed 9 years ago
0
Change Track Label style, Reposition toolbar

#77 raivivek closed 9 years ago
0
Edit Track should resize when genes are removed from the track

#76 raivivek closed 4 years ago
0
Make tracks collapsible in nature, increase sidebar z-index

#75 raivivek closed 9 years ago
0
Factor out code to export and import SimpleFeature

#74 hargup closed 9 years ago
2
Fix feature overlapping sidebar when dragged or resized.

#73 raivivek closed 9 years ago
0
Implement Edit Track synchronization between tabs/windows.

#72 raivivek closed 9 years ago
2
[WIP] Implement Edit Track synchronization between tabs/windows.

#71 raivivek closed 9 years ago
0
[WIP] Test Suit for Editing Functionality

#70 hargup closed 9 years ago
5
Rake should fail if node is not found

#69 raivivek closed 9 years ago
0
Context menu items are clickable despite being disabled.

#68 hargup opened 9 years ago
2