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I would like to suggest an approach that I have found to dramatically improve the application of dada2 to fungal ITS amplicons. Some adapter removal programs use an alignment of the paired reads to tr…
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Dear Torsten,
I would like to report schemes only if all alleles have a match and, thus, I used `--minscore 100`. However, the tool reports no scheme though all alleles of the best scheme could be …
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{
"body": {
"sections": {
"section": [
{
"@id": "sec1",
"section-title": "Introduction",
"para": [
{
…
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I encountered the following error when trying to utilize Pylmm analyses on dataset JBagley_Sucrose_trait1
GeneNetwork penguin:gene:2.10rc3-production-f6ad049db http://gn2.genenetwork.org/marker_re…
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We need to remember to make Tripal Installation profiles for Tripal3! This would make Tripal way easier to set-up and could provide more guidance to new users.
I think these should be geared toward…
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Hi! I'm excited to use LTR_retriever. I ran LTR_retriever using the following call:
```
LTR_retriever \
-genome Salvinia_cucullata_v1.1.fa \
-inharvest LTRHarvest.out \
-linelib LINEs.viridi…
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Hi Alicia,
I am having troubles interpreting some of the occupancy data in a biological context. I was hoping you could help me with it.
![plotprofiles_four_conditions](https://user-images.githu…
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We need to better document the endpoints in the new Web API.
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GN2 gives 502 errors when timing out. This can be reproduced today with long running:
http://gn2.genenetwork.org/show_trait?trait_id=1433387_at&dataset=HC_M2_0606_P
and hit correlations with defau…
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There's a weird and unnecessary "A" when selecting mRNA/protein in the query page, before the plus/minus: "Enter a z-score threshold ±:"
![image](https://user-images.githubusercontent.com/10508276…