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Hi all,
Right now we have two layers in the scanpy API. The top layer consists of the major modules like `pp,pl,tl` as well as the smaller ones like `queries,get,datasets`. In addition, we have som…
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The drive link doesn't allow me to preview or download the sfn-workshop-windows.yml file. Also the the sfn-workshop.yml file doesn't work properly on windows.
ResolvePackageNotFound:
- scikit-…
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**What is the method?**
Testing with Poisson GLM for differences between conditions in discrete clusters, as [Haber et al. 2017](https://www.nature.com/articles/nature24489#Sec9)
**Where is the co…
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Hi,
Thank you for developing such a wonderful tool. I am trying to run Giotto on my data sets but I ran into an issue when running doLeidenCluster. This is the error I get - any thoughts?
Thanks…
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When using `sc.pl.scatter()` and providing an existing axis object, the legend doesn't always appear correctly and cannot be accessed.
This doesn't seem to happen with a categorial coloring howeve…
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```
ov.utils.cluster(adata,use_rep='scaled|original|X_pca',
method='GMM',n_components=21,
covariance_type='full',tol=1e-9, max_iter=1000, )
```
the error is
```…
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This is a *very long* issue to discuss how to change the network_analysis_from_corrmat wrapper, for more modularity and easier adjustment.
* [__Decisions to discuss__](#decisions)
* [__Breaking…
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- [ ] I have checked that this issue has not already been reported.
- [ ] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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- [x] I have checked that this issue has not already been reported.
- [x] I have confirmed this bug exists on the latest version of scanpy.
- [ ] (optional) I have confirmed this bug exists on the m…
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When testing with a toy example, I received an error related to how `pcst_fast` is called:
```
Traceback (most recent call last):
File "/miniconda3/envs/oi2/bin/OmicsIntegrator", line 8, in
…