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I am trying to identify the correct GO terms to use in annotations for a paper that talks about gamma-secretase complexes containing either presenilin 1 (Psen1) or presenilin 2 (Psen2).
We have th…
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Dear all,
Today I realized that the current way to specify digestion enzymes hardly allows for N-terminal cleaving proteases? For instance the usage of LysN would require to define all amino acids …
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Dear all,
I have my raw files in .t2d and had a hard time converting them to mgf or another universal format. I add to do it by hand, basically.
I am worried I've done something wrong because I'…
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Here is an example of what the proteins look like inside Peptideshaker GUI:
(2.18 and…
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These two terms look like they are meant to cover the same thing
[Term]
id: GO:1902906
name: proteasome storage granule assembly
namespace: biological_process
def: "The aggregation, arrangement…
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Hi Harold
Can you fix this please? metalloendopeptidase activity (GO:0004222) has 22 EC xrefs (and 21 Metacyc xrefs and 93 Reactome xrefs). Should just be EC:3.4.24.
id: GO:0004222
name: meta…
sjm41 updated
3 years ago
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GO:2000640 - positive regulation of SREBP signaling pathway
is a
is_a positive regulation of transcription by RNA polymerase II
I don't think we now normally connect the signalling pathway to tr…
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I am trying to run open-workflow on a timsTOFpro data but it is failing with "could not find mzData" message? I have loaded the output folder at https://drive.google.com/drive/folders/1U_n-hxpWwUq7EDj…
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Please remove from the fission yeast slim set and add the taxon restriction 'never in S.pombe'
See
https://github.com/geneontology/go-annotation/issues/3474
for more detail.
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Hi,
I am new to R programming. sorry if it is a basic question.
I installed the genehummus but it was not inbuilt with other ids like brassicaceae ids. How to pull out other taxanomic ids based …