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Both genes and transcripts have multiple types (particularly in GENCODE, as defined here at UCSC - http://genome.ucsc.edu/cgi-bin/hgTrackUi?hgsid=172011164&c=chr21&g=wgEncodeGencode).
At present thi…
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Read data directly from VCF files that are compressed and indexed with `bgzf` and `tabix`.
Probably try to make a generic store base class that handles bgzf/tabix data, and that can be inherited from…
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i was attempting to check this out and think it would be really useful, but i'm having issues installing.
```
$ git clone git://github.com/daler/metaseq.git
Cloning into 'metaseq'...
remote: Counting…
brwnj updated
11 years ago
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after getting the hg18 xenoRefGene table from UCSC downloaded as an extended bed (12) file, i do the following
```
wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/bedToBigBed
chmod +x bedT…