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This project will be developed openly using open source framework for collaborative development.
Please list below any specific stakeholders we should involve.
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I tried doing passive synchronization between my sCMOS camera and laser triggering using u-FPGA (AU) device through htSMLM plugin. The '1-On' laser trigger works. However, the ''follow/camera mode'' f…
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Previous submissions of the fission yeast genome have used "locus_tag" for the systematic identifier (since before 2002).
We are now being asked to use "old_locus_tag" because the PomBase locus_tag…
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```python
from spatialdata.datasets import blobs
import spatialdata_plot
sdata = blobs()
sdata.pl.render_images('blobs_multiscale_image', cmap='gray')
```
gives
```
Traceback (most recent …
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```python
@app.get("/file/{file_id}")
async def file_get(file_id) -> str:
# return presigned public URL
match file_id:
case "music":
url = "http://212.183.159.230/5MB.zip"
…
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Hi,
I've been trying to softmask a 40Mb algal genome (53 contigs) for a subsequent annotation.
First, I tried using funannotate mask (a wrapper for Repeatmodeler and RepeatMasker), it run 300h w…
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Our organization has implemented a strategy where we encrypt files using the AES CTR mode. This produces files of equal length compared to the original and it preserves byte positions within the encry…
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Hi @marcomusy,
I would like to visualize a VTI file that correctly visualizes in Paraview in a Jypiter Notebook. I am executing the following in the Jupyter notebook:
```
from vedo import load,…
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@BioinfoTongLI @krokicki
Did you ever try to run NF workflows using GitHub actions?
I think that could be useful to:
1. demonstrate that it should also work on some arbitrary Linux computer
2…
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@constantinpape @vzinche
Not sure this repo still belongs here...
Do we still own the platybrowser org? If so, maybe we move it there?