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Hi Alex,
Thanks heaps for such a spectacular tool.
I was reading through couple of the past tickets and came across this one #240 , in particular where you recommend at the end of the post to…
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I have assembled a bacterial genome from Nanopore long reads using Flye and would like to use polca to polish them using the Illumina paired short reads. I have installed Masurca by cloning from githu…
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Hello, my name is Andrea and I am a bioinformatician who is currently working with SARS-CoV-2 sequences in order to identify quasispecies within given samples. I have been trying to use CliqueSNV so a…
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I notice that the C++ code forces two bits high:
```cpp
engine(itype state = itype(0xcafef00dd15ea5e5ULL))
: state_(this->is_mcg ? state|state_type(3U)
: …
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Dear @priesgo
While going through the pipeline, I realized that the VCF2FASTA does not masks the regions of low coverage. In amplicon sequencing data, there might be regions deprived of reads. I t…
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I'm thinking about trying this out for a backend for my VEBA eukaryotic binning module (https://github.com/jolespin/veba) as an alternative to MetaEuk.
Looking at the examples here:
```
Helixer.…
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Hello,
I am interested to confirm an allele frequency for a SNV in BRAF gene using amplicon sequencing data. The length of amplicon is 271bp, and paired reads are 101X2. So there is a gap between t…
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Hello!
Thank you for this brilliant tool.
I've been using it for an application in which syntenies inferred using `mummer`'s `nucmer` (so, at the DNA-level) were partial, when compared with `mumme…
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Input: PacBio long read, HiC and Illumina short read data
Assembly: Canu v2.1.1 and then run my assembly through purgeHaplotigs
Variants: FreeBayes
I process HiC and PacBio files as recommended …
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VPIPE_BASEDIR = /opt/V-dock/V-pipe/workflow
Importing legacy configuration file vpipe.config
MissingSectionHeaderError in line 107 of /opt/V-dock/V-pipe/workflow/rules/common.smk:
File contains no …
dstcr updated
2 years ago