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Motivated by https://github.com/dhimmel/gene-ontology/issues/5
@NegarJanani to attempt to update this repo, you can:
1. install the conda environment
2. follow the readme execution command
Y…
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I run this command with the new version of magnet
`python magnet.py -i ZYMO_D6311_14.nanoq.10.1000.fastq.gz -m ont -o ZYMO_D6311_14.magnet_1 --threads 30 -c relative_abundance.tsv`
i get this error
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Hi @nick-youngblut,
when I try to build the gtdb database using r207, I get:
```
gtdb_to_diamond.py -o gtdb gtdb_proteins_aa_reps_r207.tar.gz taxdump/names.dmp taxdump/nodes.dmp
2023-08-23 13:53…
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Hi. I have encountered hundreds of unmapped accessions, for examples NZ_LS483329, when building database from virus, bacteria, archaea, fungi, protozoa and human reference genomes, with est, gb, gss a…
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Itemcode - CCA4018
MRP- 105
Rate -100
Billing Rate - 78.125
Amount -78.13
Tax Per 28
Taxable 78.13
Tax amount 21.88
Total 100.01
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Dear,
I'm trying to use OMArK to assess the quality of a genome annotation and to be able to compare multiple ones later.
However, whenever I try to run OMArK with the command `omark -f killi_lift…
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Dear,
I completed the test running without probe successfully. Now, I am running the test to obtain primers and probes with the option: internal_oligo: --make-oligo 1 --int-opt-size 20 --int-opt-tm…
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Write documentation to create the various databases used by BlobToolKit pipelines – BUSCO, Diamond, Blast
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Hello,
I just installed krakenuniq v0.5.3 and tried to build archea database
but I have the following problem.
after downloading the taxo and refseq/archea data krakenuniq-build exit with erro…