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vcfnp.variants behaves strangely, when parsing the VCF into a NumPy array and cuts the length of the CHROM field so that it ends up to be at max. 12 characters.
In general, this should not be a pro…
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Hi while running in default mode a set of proteins against optimzed bacteria (hmm) i get an error
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Reading idmap /home/david/work/sources/eggnog-mapper/data/hmmdb_levels/bact_50/bact_50.hmm.idmap…
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Post your lay and scientific abstracts below. Aim for a maximum of 250 words for both. Thanks!
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#### Summary:
I'm trying to fetch some data from NCBI but it didn't work. Then, i try to use the example which is in the README. I got the same error.
#### Description:
I think it's a problem f…
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Hi,
I've tried to run the example in metAMOS version 1.5rc3: sh test_phylosift.sh
And then it shows the following error. Could you help me answer this question?
```
Warning: BLASR is not fo…
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So in my continuing efforts to make your life difficult - I'd like to map the contigs obtained from de novo (pathogen discovery pipeline) or really any de novo assembler and map them (and unassembled …
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I could see uniprot protein database has been used in your pipeline.
1) Does uniprot protein database used only for functional annotation purposes or for any other steps in the pipeline?
2) What are …
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I am running into errors when using the test_ima.sh script to test my installation of iMetAMOS. The errors read:
Error, provided contig file does not exist: ftp://ftp.ncbi.nih.gov/genomes/Bacteria…
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Hi @DCGenomics,
Do you have a list of project titles and maybe the description of them from previous hackathons you were involved in? We would like to see what a successful project look like and prov…