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Mothur expects the id field to be first in the taxonomy definition, but it should be allowed anyway in the string to make it compatible with MEGAN output.
Mothur expects something like:
{"id":"O…
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Hi @gavinmdouglas ,
Within my conda 2019.10 environment I'm trying to install q2-picrust as per the Qiim2-Library instructions:
```
conda install q2-picrust2=2019.7 -c conda-forge -c bioconda -c ga…
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Hi,
I pulled the latest docker image, but am struggling with the Documentation. What I am trying to do is create a Metagenomics sample of multiple genomes, with a mixed abundance. The genomes thems…
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We only have data import from QIIME2 format (from external files), and then we have converters (within R) from DADA2, Biom, phyloseq to TSE.
I suggest adding import function that could import data…
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Good Day!
When I run Humann3 according to instructions for the use of demo Struo2 database (http://ftp.tue.mpg.de/ebio/projects/struo2/GTDB_release95/humann3/ReadMe.md), of course suitably adopted …
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Hi,
I try to download Tax4Fun package using its readme doc. I use
R CMD INSTALL Tax4Fun_0.3.1.tar.gz
Then I got this error:
* installing to library ‘/home/eman/anaconda3/lib/R/library’
ERROR:…
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On a fresh conda install (`metaphlan 3.0 pyh5ca1d4c_1 bioconda) with python 3.6, nothing else in environment:
```
$ metaphlan --input_type fastq kneaddata/C0005_3F_1A_1000k_1_kneaddata.fastq -o ./…
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Issue: Tensorflow seems to be breaking across multiple versions.
I'm trying to install tensorflow with another package, qiime2. That install procedure is as follows
```
wget -q https://raw.g…
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Hi,
Is there any to use dada2 output (asv abundance table, taxonomy table assigned with SILVA database)directly in picrust2 or to convert the dada2 output to picrust2 compatible format? I didn't fin…
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https://github.com/mothur/mothur.github.io/pull/47#issuecomment-712168170