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For sure available genomes include hg38, hg19, mm10. Anything else?
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# OGS remapping
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate old Apollo2
- [ ] back …
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I'm in the process of annotating the genome of _Icerya purchasi_ (https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_952773005.1/) and have come across a large problem.
The final RepeatMasker annotat…
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I would like to use TQSLE for transcript quantification, but I only have the bam files from STAR, is there any possible for me to perform the analysis? Thanks.
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### Ask away!
Hi, I was trying to run the Pore-c workflow on a local desktop which has 16 cores with 128Gb memory.
I kept getting error at the step pairsToCooler.
Please advise how I could fix…
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Wide range of issue and their solution about or with reference genome.
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This issue aims to model simulation agent parameters using a DNA and genes-inspired approach. By structuring agent parameters, such as “learning rate,” as genes within a genome, we can encode, decode,…
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Teton currently will remove human reads and do taxon classification
Add support for SizeMeUp to determine the genome size from the assigned taxon
then finally produce a sample sheet with genome …
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As the codebase slowly grows, it becomes more important to make sure we have a standard and robust way to handle different genome builds.
I am currently worried about lines like this one:
``` python…
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It would be useful to have complete genomes in the repository for Selenobot purposes (necessary for extending predicted selenoproteins).