-
Running
```
➤ ntcard -t 32 paired_dat1.fq
Runtime(sec): 0.1228
```
does not output any files. However if I specify a k value:
```
➤ ntcard -t 32 paired_dat1.fq -k64
Runtime(sec): 13.2829
``…
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## Expected Behavior
To analyze the data through the prefiltering step. As expected, the example data set works correctly using the program.
## Current Behavior
There seems to be a problem with…
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Hello:
i tried the last example today and it does not work anymore.It returned 0 tweets. Everything was fine yesterday so do you know what the problem is?
Thank you
-
Hello,
I am using the error correction code of fermi-lite in my thesis and it works pretty well. I have noticed that count k-mer occurrences with help of a table built on top of a set of khash tabl…
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Hi,
I'm trying to run Tracer on my work cluster. It seems to run fine up until the part where it is quantifying with kallisto (or perhaps just after). Below is the last part of the error message. A…
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Hi,
I ran Trinity-v2.4.0 in parallel and the processes died due to one of the following reasons:
1) Error, reads file listing: partitioned_reads.files.list is empty. This tends to happen when th…
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## Expected Behavior
Shouldn't segfault.
Ideally it should present the user with an error and some guidance on what to do.
## Current Behavior
Segfaults during prefilter stage due to:
```
Qu…
unode updated
7 years ago
-
Hello!
I am trying to assemble de novo many transcriptomes which were sequenced using IonTorrent (single end) with around 45 millions of reads (length = 135bp). Trinity starts to run by... few min…
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Hit bump with Trinity on Mox...
seems to be something to do with normalization?
TLDR the error.
```
Thread 8 terminated abnormally: Error, not all specified records have been retrieved (…
sr320 updated
7 years ago
-
What are the recommended defaults for the following options:
```
--min_kmer_frac MIN_KMER_FRAC
--max_kmer_frac MAX_KMER_FRAC
--kmer_count KMER_COUNT
--start_gene_id START_GENE_ID
--start_ge…