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Hi Matt,
I created this issue for us to discuss the alignment algorithm choice, as I remembered I didn't want to bury discussions in email. So, I will try to use the issue tracker more judiciously!…
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hi,
I am testing the ancestor reconstruction method using simulated sequences for a given tree and given evolutionary distances. I would like to estimate the reconstruction using those given distance…
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I'm making this a priority of 9 only because it is needed before TreeBASE2 can be made public. We need to make sure that reviewers or referees can have access to datasets that are "in progress" and as…
ghost updated
8 years ago
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I would like to make some changes to the **phylo** module of biojava. I would like to factor out the pairwise distance calculation in [TreeConstructor.java](https://github.com/biojava/biojava/blob/mas…
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when I run the mmseqs2 to search sequence, I encounter a an error at blastp.sh:
$ mmseqs createdb queryDB.fasta queryDB
$ mmseqs createdb targetDB.fasta targetDB
$ mmseqs createindex targetDB
$ mkdi…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/CuppenResearch/MutationalPatterns
Confirm the following…
roelj updated
8 years ago
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If I compile with gcc-4.7 in C++11 mode I get the following errors:
```
In file included from /home/drwells/Documents/Code/CPP/dealii-dev/source/fe/fe_tools.cc:19:0:
/home/drwells/Documents/Code/CPP/…
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Is there any practical way to achieve this? Consider: I have a very large matrix describing edge weights between all pairs of vertices. This is an NxN matrix and is impractical for graphs with orders …
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Hi
I have installed Jasper according instructions and it was running. I have changed it to the client multilanguage pack and afterwards it was not running anymore. I like to get it up and running with…
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This work looks very promising but the documentation is a litle scarce. Where it explains the different options for funcname? I am trying to do global nucleotide alignment not considering flanking gap…