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m-orton
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Evolutionary-Rates-Analysis-Pipeline
The purpose of this repository is to develop software pipelines in R that can perform large scale phylogenetics comparisons of various taxa found on the Barcode of Life Database (BOLD) API.
GNU General Public License v3.0
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Matt - task list
#45
sadamowi
closed
7 years ago
9
Map Figures
#44
m-orton
closed
7 years ago
20
Sister vs. Phylo pipeline comparison
#43
sadamowi
closed
7 years ago
3
New Results Thread
#42
m-orton
closed
7 years ago
73
Ideas to consider for V2
#41
m-orton
closed
7 years ago
16
Identify weird sequences
#40
jmay29
closed
7 years ago
9
Very minor edits!
#39
jmay29
closed
7 years ago
5
Error on line 1572 of Annelida branch
#38
jmay29
closed
7 years ago
5
Jacqueline got an error line 569 of Annelida branch
#37
jmay29
closed
7 years ago
10
Median latitude
#36
jmay29
closed
7 years ago
10
Update to Pipeline and New Branch
#35
m-orton
closed
7 years ago
3
Model test
#34
jmay29
closed
7 years ago
4
R Style Guide
#33
jmay29
closed
7 years ago
16
Alignment of mite group Mesostigmata
#32
sadamowi
closed
7 years ago
25
New Mollusca Results
#31
m-orton
closed
7 years ago
14
Sally's next tasks
#30
sadamowi
closed
7 years ago
22
Question about filtering by sequence length
#29
sadamowi
closed
7 years ago
17
Decision needed: selecting the final trimming length
#28
sadamowi
closed
7 years ago
2
Discussion - Running Cnidaria
#27
sadamowi
closed
7 years ago
6
Using Cloud Computing with RStudio
#26
m-orton
closed
7 years ago
88
Additional package needed
#25
sadamowi
closed
7 years ago
2
Discussion on running the phylum Mollusca
#24
sadamowi
closed
7 years ago
12
Sally tasks for next week (note on Dec 7th)
#23
sadamowi
closed
7 years ago
12
Question - Are "zero" differences in relative distances reflected?
#22
sadamowi
closed
7 years ago
2
Sally got an error on line 1610
#21
sadamowi
closed
7 years ago
5
Sally task - check p values
#20
sadamowi
closed
7 years ago
3
Sally got an error on line 1532
#19
sadamowi
closed
7 years ago
7
Jacqueline will run the code on fish
#18
sadamowi
closed
7 years ago
2
Question for Matt: Can efficiency of outputting alignments be improved?
#17
sadamowi
closed
7 years ago
3
Decision needed: Selecting number of alignment iterations
#16
sadamowi
closed
7 years ago
16
one more line needed for using muscle?
#15
sadamowi
closed
7 years ago
2
Make sure Sally and Matt get the same results before finalizing pipeline
#14
sadamowi
closed
7 years ago
9
Error message when Sally running line 945 - Annelida branch
#13
sadamowi
closed
7 years ago
3
Error message when Sally running Annelida branch - line 916
#12
sadamowi
closed
7 years ago
1
Additional package needed? colorspace
#11
sadamowi
closed
7 years ago
4
Alignment method selection - Annelida branch
#10
sadamowi
closed
7 years ago
15
Error message when Sally running Annelida branch - line 869 - Nov 28
#9
sadamowi
closed
7 years ago
6
Update to Annelida Branch 2 - Minor edits to comments plus one extra package needed?
#8
sadamowi
closed
7 years ago
1
Annelida update - minor edits to comment lines
#7
sadamowi
closed
7 years ago
0
Notes on Echinodermata Branch
#6
m-orton
closed
7 years ago
0
Notes on Cnidaria Branch
#5
m-orton
closed
7 years ago
1
Notes on Annelida branch
#4
m-orton
closed
7 years ago
2
Test pull - adding Sally to contributors block
#3
sadamowi
closed
7 years ago
1
Issue #1 - Notes on sequence length decision - 620 bp
#2
sadamowi
closed
7 years ago
2
Create LICENSE
#1
m-orton
closed
8 years ago
0