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Dear Dr. Chin,
How are secondary reads defined by DALIGNER? Based on the following comment, it looks like that the longest read is considered the best, all else are secondary for a particular ZMW wel…
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When using CCS reads as raw or preads (coming from the SMRT portal), Falcon dies It is dazzdb that does not like the headers and fails to create the database. Does falcon sense use the CCS information…
fbemm updated
9 years ago
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- ABySS 1.9.0
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Demo'ing the pipeline with burnin data from phage. I get some warning, but not sure what to do. I'm guessing the DALIGNER step has failed, but not sure.
```
>make -f pipeline.make INPUT=../2d.fasta…
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I have various versions of Falcon. Is there a way to look at the Falcon installation directory and get the version?
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For example,in 0-rawreads/m_01490/,the rp_01490.log shows :
Merging 13 files totalling 1,738,764 records
LAmerge: Cannot open ./raw_reads.L1.1490.1967.las for 'r'
Merging 13 files totalling 1,897,853 …
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Hi Chin:
When the program come to 0-rawreads/ LAsort stage,I mean ,based on the number of ./sge_log/d_\* finished files,I know the first stage daligner was just completed.But when falcon is running t…
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Hi
When I run nanocorrect-overlap.make I get the following error
perl ~/nanocorrect/nanocorrect-preprocess.pl ../Test_Npore_ReadsPass.2D.fasta > Test_2D.pp.fasta
~/bin/fasta2DB Test_2D Test_2D.pp.fas…
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hello,
I have been trying to run Falcon on our cluster (SGE, 4x12 cpus, 128 Gb of RAM) and the process is runnign, but is not using all the resources, as well as it is not writing anything in the 0- …
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Hi,
Any idea about the object URL error?
Best,
Ying