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Hi,
I'm using jellyfish/2.3.0 with a ~160G fastq (pacbio DNAseq reads) file as follows:
`jellyfish count -C -m 21 -s 280G -t 10 file.fastq -o reads.jf`
The first time I got this error:
```
…
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Should we rename the [allow_bad_kmers](https://github.com/oxli-bio/oxli/blob/main/src/lib.rs#L394-L403) option in `consume` to make more intuitive?
This opt is passed to SeqToHashes as the `force` …
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Hello Trinity Team,
I'm currently triying to identify alternative transcripts from RNA-Seq Homo Sapiens samples.
I ran Trinity successfully on each of my samples :
`Trinity --seqType fq --left…
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This is largely for my own reference, stuff I've discovered during #1016 and #1017:
- `Hashtable::consume_fasta_and_tag` doesn't use `imprint_next_read`, or catch `NoMoreReadsAvailable`
- Ditto to `co…
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Hi,
I am having trouble with running Sequence quality control using DADA2 in `DADA2: 1.26.0 / Rcpp: 1.0.12 / RcppParallel: 5.1.6`
My script is as shown below:
`run_dada.R --input_directory /tmp…
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When I run abeona v0.40.0 on my data, then I get the following error message:
```
INFO:cortexpy:Log level is INFO
INFO:cortexpy.traverse:Loading graph: g29549.traverse.ctx
INFO:cortexpy.traverse…
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### Is your feature request related to a problem? Please describe
The paternal and maternal kmer inputs (as well as the HiC inputs) are specific to the reads, and I think they should be input togethe…
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Dear Joshua,
thank you for your time in advance. We managed to get polycracker running using a cluster with more suited memory and space. We obtained the following results:
The SpectralClusterin…
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```
My data is paired-end reads,but when i use the -a -b options,the program said
as follows
===========================================================
Start at: Thu Nov 18 23:10:33 2010
Load in …
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Hello, I have recently obtained data on several Mtb lineage 5 and M. canetti strains, and I have been using Mykrobe v0.13.0 to predict their species and lineage.
In the case of the Mtb lineage 5 sa…