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**#This following is the params.txt**
Command line: ./../SPAdes-3.13.1-Linux/bin/spades.py --careful -t 20 --pe1-1 /run/media/user1/storage1/5_hari_g/trimgalore_output_2/P5652_PC…
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Although Gretel is not designed for recovering large haplotypes, it should at least try its best. Apparently very large contigs will cause Gretel to write very large temporary files and lead to an `OS…
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In order to connect datasets with their associated interaction claims, we'd like to use elton nanopubs as a started point to create a dervied web annotation snippet.
The goal is to identify additi…
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I can't find a reason for filtering out these samples
- Missing samples in PRJEB31756: ERX3253126
- Missing samples in PRJNA338327: SRX2010868
- Missing samples in PRJNA407973: It should have 50 s…
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Hi,
I got memory allocation error like following, why there is negative memory size?
Error: could not allocate -1281080257 bytes of memory
Best,
Kun
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Hi everyone,
I am working with an ASV table from dada2 output in R. I did some data wrangling to make a 'taxonomy' column as similar as I could to the example asv table provided. I also changed 'AS…
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Hi all,
This is such an awesome review, and i'd love to use it as a basis for teaching, but i've had to jump back-and-forth through sections, as the current structure doesn't flow as naturally for a …
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I was testing fastgather with some fecal microbiome sample, and noticed that while fastgather does use much less memory compared to sourmash gather, it actually takes much longer to finish. When using…
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Hi,
Been running the pipeline and get the following error for FRCBAM and REAPR, however I'm mostly interested in REAPR and can't quite find out the problem. It is installed in Utilities/cpp/Linux-x…
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Hi, is there any way to read a list of sample ids and remove them if they have 'NA'? I cannot see how to get the vector class into the subsample function from a list.
Thanks.
OTU_Met_F