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Hi,
I'm trying to test out SailFish for the first time. I downloaded the linux binary version 6.0. The installation test worked, as did the indexing step on my transcriptome reference. But, I'm runn…
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I recently updated my eXpress version in order to take advantage of the TPM calculation. Unfortunately, I'm only getting NaN's or 0's. I would appreciate any help or explanation!
I ran eXpress in the…
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Create method for NanostringAssay objects that updates the "measurement" field of the mapping to contain thresholded data.
Signature:
threshold(NanoObject, groups, manualThresholds=NULL)
NanoObject: …
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I'll start by constructing a FluidigmAssay from NanoString data, then work on specializing a NanoStringAssay class that captures anything which is missing.
Okay, I'm able to construct a FluidigmAssay…
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Lucas mentioned that some genes were not unique and should be summed to get a count within the lane.
Calling exprs() on a NanoStringAssay object tries to construct a matrix of columns = number of gene…