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The @PavlidisLab/curation team compiled a list of single-cell experiments that need special treatment on import. We can convert those into test cases.
## Bulk/single-cell mix
Contains a mixture …
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I was trying to carte lineage tree and calculate branch probabilities with mira.time.get_branch_probabilities using terminal cells detected from mira.time.find_terminal_cells. I got the error of "LinA…
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I'm very sorry to bother you.
Recently, I choosed alt contigs on a chromosome to construct a pangenome which is similar to construct GRCh38 Alts Graph.
When I used a gbz file , gencode. v38. pri…
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Hi,
i wanted to say thank you for making this alignment viewer, i really like it!
I have had some problems viewing MSAs of RNAs with modified residues.
The problem seems to be that with all the m…
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Missing reference data for the following tools:
- RNA-STAR
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MSID: 103167
Version: 1
Preprint DOI: https://doi.org/10.1101/2024.10.09.617384
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-h…
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Using advanced Search: https://data.niaid.nih.gov/advanced-search
This Query has 23,443 results but after clicking submit it returns no results
_exists_:citation.author.name AND description:"RNA-seq…
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from pseudo_bulk import *
adata_RNA,adata_ATAC=find_neighbors(adata_RNA,adata_ATAC)
samplelist=list(set(adata_ATAC.obs['sample'].values)) # sample is generated from cell barcode
tempsample=samplel…
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See https://gitlab.com/i5k_Workspace/workspace_roadmap/-/wikis/Adding-an-organism-CWL-update for full description of each task (requires gitlab login)
- assembly accession number: GCF_040414725.1
…
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Thank you for `actions-rs` and `actions-rs/clippy-check`.
Do the checklist before filing an issue:
* [x] Is this related to the `actions-rs` Actions?
I don't know. I'm new to GitHub act…