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Hello, could you send me the dataset, please?
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I have started testing the runtime for a more practical number of total streamlines/seeds. I used 10 million seeds (`-seeds 10M`) which in turn resulted in ~2.2M streamlines remaining after ACT.
He…
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Hi,
I am running the dipy_3dshore reconstruction workflow for my DSI diffusion data. I had used the 3dshore head motion correction for the preprocessing. I am giving that folder as input.
The recon…
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Hi @akshayka ! Thank you for your beautiful work and this wonderful library.
I wonder if it is possible to use pyMDE with distances or affinities matrices as input. I'm working on a topological dat…
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Hi
CMP3 seems to fail to create the DTI derivative.
Steps to reproduce:
1. Start CMP3 GUI RC2
2. Click on the first brain, config
3. Click on the second brain -> a FileNotFoundError appears imm…
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* dmriprep version: 0.2.2
* Python version: 2.7.15
* Operating System: centos 6
Dear all,
I am writing to seek your expertise and advices on fieldmap-less distortion correction in DMRIPREP.
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h-w-k updated
3 years ago
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Hi,
When running "eddy" (as opposed to "eddy_correct"), I get the following error:
```
Node: diffusion_pipeline.preprocessing_stage.eddy
Working directory: /output_dir/nipype/sub-ABCD1767/diff…
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Currently EPI fieldmaps are stored in the `fmap` directory. The user specifies which scans in `func` or `dwi` the fieldmaps are supposed to correct via the `IntendedFor` field in the corresponding jso…
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@JuliaRegistrator register()
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Dear all,
we are running the MB sequence on our Siemens Prisma VE11C. Our goal is to measure DTI with a isotropic resolution of 1.25 mm. For preprocessing of the data we use FSL (5.0.9). Images we…