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The senders of e-mails from TACA and NGI-pipeline are not real e-mails. This can cause some complications later down the line with UPPMAX e-mail handling.
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Having a `settings.config` as this:
```
process {
executor='slurm'
$mapping {
clusterOptions = "--account=hugues --mem-per-cpu=3140"
time = '1h * task.attempt'
}
…
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I have some problem to get my pipeline to work correctly using slurm. The same pipeline works nicly using local executor in serial mode. Using Uppmax (/proj/nobackup/b2015353/scaffolding/) with the th…
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To make nextflow installable in the module system on Uppmax I need to contact the person who installed it on uppmax so I can figure out how to fix it.
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Tried to run Strelka on our test samples, and run into this error:
`ERROR: Unexpected format for line number '1' of fasta index file: '/pica/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8…
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Hi! When trying to copy tables from the MultiQC general statistics I get some wierdly formatted tables. This is when running `Firefox 45.1.0` through X11 frowarding on Uppmax.
**Table from MultiQC re…
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Our pipeline crashed due to a JRE error mid run. Resuming the run afterwards let the pipeline finish.
This problem has not been reproducible.
In case more information is necessary about the pipeline…
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There seems to be an issue when trying to load the `bioinfo-tools` module on our SLURM HPC. It worked just fine with earlier versions of Nextflow but appears to be broken in both `0.19.XX` and the `0…
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I found some additional issues while testing metasv. It seems that Metasv removed the --boost_ins variable and replaced it with the more generic --boost-sc variable. However just swapping doesn't work…