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Hi Felix, it's me again.
I have RRBS data set from a NextSeq run, one from breast cancer (human) and one from vid plants.
I already had mentioned this experiments in a previous thread:
https://git…
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Hi,
Following the [thread in Slack](https://anvio.slack.com/archives/C8SFMGYF3/p1552048687020300), my `anvi-self-test` crashed but for a different reason. Anvi'o seems to work fine though, at least w…
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Hi,
```
virmet wolfpack --run /home/Exp01
Traceback (most recent call last):
File "/home/miniconda2/envs/virmet1/bin/virmet", line 11, in
load_entry_point('VirMet==1.1.1', 'console_scrip…
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https://github.com/RNAcentral/rnacentral-import-pipeline/pull/12 got merged recently.
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#### I'm trying to do following to assemble a diatom:
(1) Kneaddata/Trimmomatic for my transcript reads;
(2) Mapping the reads to my unmasked genomes;
(3) Using RNA-Spades for the transcript as…
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I have successfully annotated my vcf file using a local installation of variant effect predictor (VEP). However, the filtering doesn't work. E.g. the command
`filter_vep -i vep.test.vcf.gz -filter …
matmu updated
5 years ago
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I'm running Canu v1.6 on linux through the ont-assembly-polish pipeline (https://github.com/nanoporetech/ont-assembly-polish), on a remote server. The only Canu parameter I changed was useGrid=false. …
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Extensive list of XML formats listed on EBI website
http://www.ebi.ac.uk/Tools/webservices/tutorials/aa_xml_formats
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Hi
I am not convinced that GO:0048870 cell motility: Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another. sho…
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Need a name for NDB...