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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Aufiero/circRNAprofiler
Confirm the following by …
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I'm merging results between samples using the output from the denovo circularRNA_full.txt file. I'm trying to compare the exon structure not just start and end coordinates to ensure a perfect match …
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Thanks for your work of circRNA.
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Dear Tobias,
please add circular over total count ration to spreadsheet output.
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Hi Dieterich-lab,
Just a quick question - Are the Chimeric.Junction.out counts in the LinearCount file the raw counts for the host-mRNA at the location of the circExons? I.e. if you have a 2-exon c…
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Dear Dieterich-lab,
I'm having some issues running DCC (version 0.4.7) which I hope you can help me with.
I'm trying to run the software in a virtual environment on python version 2.7.15rc1
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I have been trying to follow the DCC & FUCHs pipeline but am encountering errors with the FUCH stage.
I aligned my reads as described in the DCC https://github.com/dieterich-lab/DCC and circtools …
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Hi, I have a question about the circRNAs with close position. in the paper you said: CircRNA reads passing these filters are then merged if junction ends are very close.
while in the code,is this scr…
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Hi, I'm having trouble getting this to run with our data which is stranded paired end 150bp Illumina data with ribosome depleted totalRNA from several rat tissues. I've performed the alignment both …
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Hello,
kallisto (0.44.0) seems to be silently dropping sequences from the index.
Working example:
- download [circBase hg19 circRNA sequences](http://www.circbase.org/download/human_hg19_cir…