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Hi,
Some annotations containing special characters in the gene names, for example in dm3 genome some genes have " ' '' symbol in the gene name.
Function 'read.table' in the script plot_homer_…
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I am using quite long illumina-quality like reads for a plant genome as the short reads input. However the correction on whole genome scale does not work accurate enough to really make a difference. M…
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eg human SIDT1 has phylogenetic-based annotation to
double-stranded RNA binding
RNA transport
and interpro mapping
RNA transmembrane transporter activity
dsRNA transport
but according to a …
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We decided to create a non-test instance of Canto for FlyBase.
This is the config file from Vitor after tweaking for the PomBase server (mostly changing paths and Chado params): [canto_deploy-flyb…
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This was the specific template I was accessing.
The Pyt…
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Hello,
Thank you for the great collections of scripts.
I've followed the online guide and am at the point where I would like to download hg19. I've cd to the SeqMule folder but I receive the er…
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### Context
We have a compendium for `BOS_INDICUS` despite the fact that all the samples for it were collected using the platform for `BOS_TAURUS`.
### Problem or idea
We should collapse org…
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Hi, In the manual of TEtranscript it requires -c -t to specify the control/treatment. But my samples are from multiple stages and I just hope to get TE expression of different stages. What should I do…
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Please hide the gene column from the genotype and phenotype tables in Fly-canto.
Please also hide the organims column from the phenotype tables in Fly-canto.
These are not necessary because both t…
vmt25 updated
5 years ago
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Can be selected in many ways, this may be a start:
```
mysql -u anonymous -h mysql-eg-publicsql.ebi.ac.uk -P 4157
use ensemblgenomes_info_41;
```
Then
```
SELECT species, assembly_name, a…