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1. decreased lncRNA level
2. increased level of phosphate starvation gene mRNA during vegetative growth
3. abnormal protein localization to chromatin at polyadenylation site
4. abnormal mRNA altern…
mah11 updated
4 years ago
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Dear Eduardo,
SUPPA2 is able to quantify and report alternative last (AL) exon events, which is good, since the last exons are always the target of several factors such as miRNAs and regulators of …
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Dear Team,
I read through the paper and found your tool, yanagi, very powerful and I'm excited to try it.
This is just a question rather than issue. I have an RNA-Seq dataset with the following ch…
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Dear GO editors,
Could you please consider to create a GO term, "mRNA alternative polyadenylation",
for a new process described in PMID:29276085.
That paper shows that the cleavage factor Im …
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New terms for human IgG immunologlobulin complexes (part of the HIPC-CL collaboration)
These are pretty straight forward, similar to existing terms for IgA and IgD, except I have added a bit of com…
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hello, I wan't to use PAQR find APA in other species, and I have some polyA site information, how can i get annotation file like mm10,hg38
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I'm seeing a difference between mikado-2.0rc4 and mikado-2.0rc6_* versions in relation to calling and exclusion of transcripts with retained introns.
I'm attaching a screenshot of this region http:…
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At the moment, we have a significant number of mesh terms in DRAO. These terms are, in themselves, good. However they bring with them the Mesh hierarchy which creates a duplicated / parallel hierarchy…
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I am trying to implement a rule that duplicates a complex, including its internal state configuration.
Concretely, let's say a monomer has interface `E(i1{a b c}, i2{d e}, x[y.E], y[x.E])`. Each m…
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Hi @GenomeRIK,
I want to try TAMA to find APA(Alternative PolyAdenylation ). You know, FLNC reads were removed polyA tails. BUT I'm confused which fasta should be used, CCS.fasta, FLNC.fasta, or Hig…