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Hi all
**Describe the bug**
An error occurs during installation:
`ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the …
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Could I please clarify one technical question. It is stated in the article (https://academic.oup.com/nar/article/50/D1/D777/6426060#authorNotesSectionTitle) that mapping to the GreenGenes database was…
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**Description :**
Long read sequences are failing in the demix step if the sequence id in the bed file is not matching with the reference.
**Sample name**: SRR21595278.fastq.gz
**Bed file**: http…
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**Improvement Description**
Typically we use hidden actions for the inner part of a parallel pipeline loop, e.g.
```python
def some_parallel_pipeline():
...
collection = partition_data()
f…
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### Description of the bug
Viralrecon has worked perfectly for our SCV2 and some hybrid capture protocols (with the metagenomic side). However, when I ran the pipeline by passing a custom bed file an…
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We need to add slot to identify a data object that points to an external data source (e.g., the EMP500 amplicon data).
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I am trying to plot NMDS plot from microbiome data in phyloseq and I used below command, It is working perfectly, but here I used raw otu count for NMDS plot and the rank-threshold transformation is …
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Dear developers,
Thank you very much for this advanced tool. I have a number of questions on modelling of CNVs on Tapestri data (thousands of cells and 400 amplicons):
1. I am interested in both…
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Hi all,
I've been trying to work with MiFish with a custom amplicon reference database built using makeblastdb, and a results file in .fasta format.
I've been using the command:
```
mifish s…
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Hello,
I am running lotus2 only for taxonomy assignment of ITS1 sequences (so -taxOnly) (which is great! works super fast). I assumed that the output file would contain the same number of sequences…