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Out of curiousity, the description says:
> Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for amplicons
I saw …
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### Checklist
- [X] There are [no similar issues or pull requests](https://github.com/taxprofiler/taxpasta/issues) for this yet.
### Problem
A simmilar issue of different file formats exists for am…
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Hi,
I have analysed ITS1 amplicons from fungal samples (leaf endophytes) using kraken2 and the PlusPFP-16 indices provided by Ben Langmead.
These amplicons were trimmed for PCR primer sequences, b…
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**Is your feature request related to a problem? Please describe.**
A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]
**Describe the solution you'd like**…
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Hi @grassoste, you mentioned that you wanted to discuss a case where a Golden Gate assembly would yield a product where all the backbones are ligated together. You mentioned that you had a minimal exa…
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I suggest using the poreCov pipeline as the backend for SARS-CoV-2 wastewater lineage deconvolution from nanopore long reads. You already added `freyja` ( #274 #270), which is great as the current com…
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See this as a workflow:
```
Building OTUs, would require that your reads align very nicely. That is pretty hard with Nanopore reads, and you end up with a lot of singletons. I have tried clusterin…
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Hi,
I installed songbird standalone using conda and the test-data set ran with no issues, but I'm not able to open tensor board:
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irc47 updated
1 month ago
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Hello there
Thanks a lot already for the work on this package!
I am trying to cluster 34,937,058 sequences of about 1000bp (18S amplicons) contained in a single fasta file, I'm using the following…
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I am using a custom amplicon panel for wastewater sequencing and would like to know the process of adding this to the primer sets folder.
E.g. The naming conventions needed and how to go about gene…