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Tiling images using bfconvert:
```
bfconvert /tmp/source.tif /tmp/test/prefix_X%xY%y_Z%z_T%t_C%c.ome.tiff -tilex 1024 -tiley 1024 -option ometiff.companion prefix.companion.ome
```
generate inco…
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https://github.com/ome/bioformats/issues/3755
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Both `PYMEVisualize` and `PYMEAcquire` will exit on a `Command+Q` or pressing the `X` for exit. `dh5view`, by contrast, can only be closed with a `Ctrl+C` in the shell.
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Setting the "AquiredDate" attribute for _Image_ elements works only for the first image
``` python
import bioformats
metadata = bioformats.OMEXML()
metadata.image_count = 10
for i in xrange(metadata…
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I am using python-bioformats to read TIFF file. I get following this everytime.
```
09:04:19.664 [Thread-0] DEBUG loci.common.NIOByteBufferProvider - Using mapped byte buffer? false
09:04:19.675 …
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Thank you first of all for putting the pims module together!!
Unfortunately, I am running into problems opening Nikon .nd2 files.
Here is what I do:
```
mamba create --name imageprocessing p…
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When creating a new geometry for PDE sims, image fails to load
NullPointerException-Cannot invoke "org.vcell.vcellij.ImageDatasetReader.getImageSizeInfoForceZ(String, java.lang.Integer)" because "i…
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### Description:
Allow view image for multiple channels (third option) bioformats
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First I should commend the creation of this package. I had just about given up (at least temporarily) on using bioformats due to the lack of python support, when I realised this package had been relea…
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If metadata is present as a filed called "metadata.txt", it is somehow read and this seems to cause a crash preventing any data to read.
Here is an example metadata.txt file causing such a crash:
[m…