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Snakemake may not be the best workflow manager for HPC; we're teaching it because it is broadly accessible, and the lessons can be broadly transferrable.
Include an episode at the end to discuss th…
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [src/…
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It would be more useful to know the average and all related tasks as it runs on different data. A script, like below, would be simple or maybe giving a flag in the omics-run-analyzer.py to combine all…
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [nano…
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CWL allows to describe tools/pipelines/workflows and enhances reproducibility. Hoverer, describing is not only about how to run or technical info about execution environment but also about what this …
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Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter:
- [blas…
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Intel(R) Intelligent Storage Acceleration Library (ISA-L) module, which contains `igzip`.
`igzip` is a fast gzip implemenetation which can decompress 6x faster than gzip.
This can be quite useful …
ghuls updated
3 years ago
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@drosofff, est-ce que les workflows sont en quelque versionné ?
Comment savoir si nous ne les avons déjà pas https://usegalaxy.fr/workflows/list_published ?
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When there is a failure writing to the log file when using the `logfile` option in `cov_ed`, the error looks like this:
```
*** caught segfault ***
address (nil), cause 'memory not mapped'
Trac…
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Hi,
I'm currently trying to install flotilla from scratch, but I cannot appear to use any part of it--having a more in-depth tutorial for users (especially from Windows--`activate` doesn't seem to wo…