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Hi there!
I am performing rmats analysis on RNAseq data of two conditions whose each group have two replicates. The analysis gives no significant results. All events are reported with FDR score equ…
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Hi,
I was wondering. What is the best way to incorporate biological replicates in RASQUAL study design? I have RNA-Seq/ATAC-Seq data for 100 individuals (2 biological replicates per individual)
The …
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Hello,
I noticed that when different resolution used, the compartment results may change. Is there any standard to help decide an optimal value for binsize?
I attached some tests using differe…
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Should we add more biological discussion and context to the workflow sections?
This would allow us to better motivate why one would like to learn the individual steps!
In fact, now with the new …
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https://github.com/zakodium-oss/analysis-dataset/blob/main/docs/data/format/biologic/wait/wait.mpr
All variables are empty. Is that expected?
## Pre-learning
- Datacamp
## Classes
1. Tidy data. dplyr.
2. More tidy data. tidyr. ggplot2.
3. Genomics example…
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Hi Yulia,
I can see that you have been working on a project to make a biological module in python.
I'm interested in collaborating in your project.
A little about me, I'm python developer, I'v…
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http://doi.org/10.1101/093021
> Artificial neural networks (ANN) are computing architectures with massively parallel interconnections of simple neurons and has been applied to biomedical fields suc…
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I'm wondering if it would be appropriate to add functionality of reading files such as [`simple_somatic_mutation.open.BRCA-US.tsv.gz`](https://dcc.icgc.org/releases/release_17/Projects/BRCA-US).
Re…
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Hi Developers
I have few queries!!
First, I am trying to use Margaret for Trajectory analysis. I have Normalized and Scaled counts obtained from Seurat for single cells. For our data, we know from…