-
I have tried to use the web interface to test two different FastQ files, but the prediction plot for sample 01 is gray throughout (it was correctly found to be bisulfite-seq in the probability graph).…
-
Hi, this looks interesting.
Is there any reason the tool would not work for nanopore data called by Megalodon (rerio) and modbam2bed ?
i.e. is it restricted to illumina bisulfite data?
Thanks…
-
Hello,
I was using gemBS v3.2.10 and I realized that bisulfite conversion rates for some of the samples were missing from the mapping report. I updated to the version 3.3.0 but they are still missi…
-
```
I was approached by Suhn today, she was needing to run a bisulfite pipeline
from our pipelines selection.
Where can I learn about how to run a pipeline? I would like to learn about the
specific…
-
Hello,
I've been using your Revelio with Freebayes to call variants on methylation libraries. We were able to get good agreement between our methylated libraries and benchmarking variant dataset. …
-
Remove the "SELEX", "WGS", and the empty artifact. Check how many records are in SELEX and WGS first before removing and post this info here (with a date/timestamp when you retrieved these record…
-
Hello, I'm trying to run gem-mapper (from the hic tree) on bisulfite data.
I made the index with the "-b" flag.
Here is my command:
` ./bin/gem-mapper -I Homo_sapiens_assembly19.gem --3c --rest…
-
**Describe the bug**
I am trying it for the first time. Can you tell me why loading a reference genome takes so long?
**BISCUIT version**
Program: BISCUIT (BISulfite-seq CUI Toolkit)
Version: 1…
-
This directory appears to have many files that need to be updated, or are no longer in use and can be removed. Additionally, most input files are kept in exome_workflow.tgz, which is approaching the g…
-
Dear David,
My input file looks like this (it is a Bismark coverage2cytosine format originating from a non-model organism):
Fvb1 4 + 1 0 CG CGA
Defiant is not reco…