smarco gem3-mapper issues

smarco / gem3-mapper

GEM-Mapper v3

GNU General Public License v3.0

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issues

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splicing mapping mode for RNA-seq is supported?

#35 y9c closed 3 weeks ago
2
installing older versions of gem-mapper

#34 AprilJauhal closed 4 months ago
5
Could not write to file 'stream'

#33 cbreenmachine closed 2 years ago
1
Stuck on Alignment using --gpu

#32 JustinBellavance opened 2 years ago
2
Make Issue

#31 vincentye2 opened 2 years ago
5
feature request: option to move fastq comments to sam tags

#30 eboyden opened 2 years ago
1
Parsing FASTA/FASTQ error.

#29 Luobiny opened 2 years ago
3
gem-indexer finished with error

#28 alkurowska closed 2 years ago
2
gem-indexer GEM.System.Error::Signal raised (no=8) [errno=0,Success]

#27 alkurowska closed 2 years ago
0
Compilation failure: zlib.h: No such file or directory

#26 EmmettPeng closed 2 years ago
1
Unaligned reads?

#25 franrodalg closed 3 years ago
1
index - Successfully built but ends with error

#24 descostesn opened 3 years ago
6
Supplementary hits

#23 brendanofallon opened 3 years ago
11
questions about gem-mapper

#22 biozzq closed 3 years ago
2
question about the control sequences

#21 biozzq closed 3 years ago
1
gem-indexer and tmp file

#20 descostesn closed 3 years ago
4
chromosome names

#19 igordot closed 3 years ago
1
compile failure with gcc 10

#18 heathsc closed 3 years ago
1
Error: GEM.System.Error::Signal raised (no=11) [errno=0,Success]

#17 nchernia opened 4 years ago
4
how do GEM accept input from pipe

#16 sleepvet closed 4 years ago
1
cannot use --gpu

#15 sleepvet closed 4 years ago
2
Maximum SA-bucket (6 GB) larger than max-memory-block allowed (3 GB

#14 sleepvet closed 4 years ago
4
Feature/dockerfile

#13 eserrasanz closed 4 years ago
3
Fix typo

#12 corollari closed 5 years ago
0
clang: error: unsupported option '-fopenmp'

#11 hwlim closed 5 years ago
4
gem-2-wig output not anymore compatible with wigToBigWig

#10 splaisan closed 5 years ago
2
Adding gem3-mapper to bioconda

#9 karl616 closed 5 years ago
22
Archives including submodules

#8 karl616 closed 6 years ago
2
Why is mappability removed?

#7 magicDGS opened 6 years ago
26
Compilation failed in MacOS due to usage of sys/sysinfo

#6 magicDGS closed 6 years ago
3
compilation failed with cuda issue

#5 maplesond closed 6 years ago
3
compilation failed

#4 lmanchon closed 6 years ago
8
Bug on CPU adaptative search

#3 achacond closed 6 years ago
2
Improved version of GPU BPM realign

#2 achacond closed 6 years ago
0
No more "--complement" option?

#1 map2085 closed 6 years ago
7