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Hello,
Thanks for blobTools, it's a really wonderful piece of software. I'm using the bamfilter module to extract all sequences mapping to contigs of a particular taxon and though the original sequen…
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Hi @rjchallis @epaule,
I have problem with loading mapping data and vizualization in bloobtools. My command was - ./blobtools2/blobtools add --cov ~/Desktop/bioinformatics/K17_4_S9_L1L2_R1.fastq.gz…
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Hello!
I have used diamond to obtain hits with public databases and then filtered my data using Blobtools. I have used the commands specified on your webpage (https://blobtoolkit.genomehubs.org/blo…
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Hi,
I used the interactive version to make my custom filtering and then save the list (full json to use it for filtering the fasta assembly and the reads separately). Filtering for the assembly com…
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Hi,
would it be possible to create a proper packaged release, i.e. add a pyproject.toml and setup.cfg? (cf. https://packaging.python.org/tutorials/packaging-projects/ ) It does not necessarily have…
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I would leave this question on the google group but the link´is broken and I can't find it myself.
Why use an assembled genome vs raw reads in the example workflow on the [readme.io](https://blobto…
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Hi,
I am having problems properly installing blobtoolkit.
I did several times all the installation steps as follow:
conda create -y -n btk2 -c conda-forge python=3.9
conda activate btk
pip ins…
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Hi again,
I created my BlobDir and I added coverage, hits and BUSCO results. I’ve just realised that I have to re-run the Blast analyses to better adjust the e-value. I would like to know if I should…
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Hi, I am trying to add multiple busco.tsv, the command does not generate an error. However, when viewing the meta.json file, the information of these multiple files is not observed, only the last one …
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I have been trying to provide hits to blobtools via blastx search of BUSCO gene regions vs Uniprot, however all contigs are being assigned to no-hit despite there being taxid hit info in the input fil…