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Hi,
I am having problems properly installing blobtoolkit.
I did several times all the installation steps as follow:
conda create -y -n btk2 -c conda-forge python=3.9
conda activate btk
pip ins…
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Hello,
I'm being unable to parse any database with blobtools taxify. I am following some tutorial for the assembly of MAGs. I have these diamond runs against the uniref90 database, but whenever I t…
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Hi,
I used the interactive version to make my custom filtering and then save the list (full json to use it for filtering the fasta assembly and the reads separately). Filtering for the assembly com…
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I have been trying to provide hits to blobtools via blastx search of BUSCO gene regions vs Uniprot, however all contigs are being assigned to no-hit despite there being taxid hit info in the input fil…
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Hi, thanks for this amazing tool!
I was trying to understand the execution order of database searches. If I got it correctly it is
1. `diamond` on reference proteomes from UniProt, then
2. `blas…
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**Is your feature request related to a problem? Please describe.**
Embeddable views of Cell Ranger HTML summary page on GigaDB. Cell Ranger is a set of analysis pipelines developed by 10X Genomics th…
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Hi again,
I created my BlobDir and I added coverage, hits and BUSCO results. I’ve just realised that I have to re-run the Blast analyses to better adjust the e-value. I would like to know if I should…
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I would leave this question on the google group but the link´is broken and I can't find it myself.
Why use an assembled genome vs raw reads in the example workflow on the [readme.io](https://blobto…
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Hi, I am trying to add multiple busco.tsv, the command does not generate an error. However, when viewing the meta.json file, the information of these multiple files is not observed, only the last one …
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Hi, I am producing an assembly for my species and I wanted to explore my dtaa with snailplots and contamination plots. I tried installing blobtools2 on my mac (macos 13.1), but encountered quite a few…