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**Is your feature request related to a problem? Please describe.**
We'd like to have Python scripts that execute some key workflows discussed in the developer meeting on 14/09/2023.
These are
* cel…
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Something users can copy and paste when writing up papers.
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Being able to access the metadata of each atlas though the atlas name, something like:
```python
metadata = bg_atlasapi.get_metadata("example_mouse_100um")
```
might make the UX of the napari …
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So we can package the test scripts, and have them accesible outside of the git repositories (e.g. for running the tests when packaging for `conda-forge`), a first step is to remove the test data from …
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[Sterotaxic Atlas_Karten_Hodos.pdf](https://github.com/user-attachments/files/15903901/Sterotaxic.Atlas_Karten_Hodos.pdf)
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### Is your feature request related to a problem? Please describe.
We are trying to evaluate how different cell detection algorithms find cells. And so want to find the minimum distance pairing betwe…
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[From grant proposal]
Napari provides a standardised framework for image analysis, as plugins operate upon “layers”,
representations of data such as images and segmentation masks. We will develop to…
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**Describe the bug**
- I transferred the newly generated Kim atlases (v1.1) to my local atlases folder to run the `validation.py` function on them.
- I received this warning:
```
brainglobe_at…
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The structure splitting code at https://github.com/brainglobe/cellfinder-core/blob/8d9c0767f81ce66c547a0c0a654c7466cc7e569f/src/cellfinder_core/detect/filters/volume/structure_splitting.py is currentl…
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Some of the imaging data is very large and of higher resolution than what we need for building an average template.
Would be useful to have utilities for cropping and for downsampling/resizing images…