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brainglobe
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brainglobe-atlasapi
A lightweight python module to interact with atlases for systems neuroscience
https://brainglobe.info/documentation/brainglobe-atlasapi/index.html
BSD 3-Clause "New" or "Revised" License
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first draft of symmetrical 50um blackcap atlas
#314
alessandrofelder
opened
1 day ago
0
Script to generate Allen mouse brain atlas with barrel annotations
#313
abisi
opened
1 week ago
4
add cavefish to readme
#312
alessandrofelder
closed
1 week ago
0
Remove `inspect_meshes_folder`?
#311
adamltyson
opened
1 week ago
0
Move `pymcubes` to an optional dependency.
#310
willGraham01
closed
2 weeks ago
3
Update supported Python versions
#309
adamltyson
closed
3 weeks ago
0
[pre-commit.ci] pre-commit autoupdate
#308
pre-commit-ci[bot]
closed
3 weeks ago
0
[Feature] Just one Kim dev top-level mesh
#307
alessandrofelder
opened
3 weeks ago
0
[Feature] Smooth Kim meshes
#306
alessandrofelder
opened
4 weeks ago
1
Fix AZBA
#305
adamltyson
closed
1 month ago
4
fixing kim dev atlases
#304
viktorpm
closed
3 weeks ago
1
[BUG] Kim developmental atlases fail validation
#303
viktorpm
closed
3 weeks ago
0
Ensure tests do not affect local system when run locally.
#302
adamltyson
opened
1 month ago
0
Cache atlases to speed up CI
#301
adamltyson
closed
1 month ago
0
Remove slow test marker
#300
adamltyson
closed
1 month ago
2
Return "Outside atlas" rather than key error
#299
adamltyson
closed
1 month ago
0
Return `brainglobe list` in alphabetical order
#298
adamltyson
closed
1 month ago
0
Ensure all tests are run
#297
adamltyson
closed
1 month ago
0
Standardising atlas generation scripts
#296
viktorpm
opened
1 month ago
0
Move atlas generation code out of the `brainglobe-atlasapi` package
#295
adamltyson
opened
1 month ago
0
Atlas resolution as an attribute, not a name.
#294
adamltyson
opened
1 month ago
0
Enforce standardised orientation
#293
adamltyson
opened
1 month ago
0
Atlases should be returned by `brainglobe list` in alphabetical order
#292
adamltyson
closed
1 month ago
0
Save atlases to `.brainglobe/atlases`
#291
adamltyson
opened
1 month ago
0
Fixing human atlas script
#290
viktorpm
closed
1 month ago
3
Standardise the axial resolution of the allen spinal cord atlas
#289
adamltyson
opened
1 month ago
1
Update use of brainio to brainglobe-utils
#288
adamltyson
closed
1 month ago
0
Minor fixes to the atlas update workflow
#287
adamltyson
closed
1 month ago
0
The warning that an atlas is not the latest is missing a space
#286
adamltyson
closed
1 month ago
0
User is informed (twice) that the atlas is not the latest when they're updating it
#285
adamltyson
closed
1 month ago
0
Use pooch to download data
#284
adamltyson
opened
1 month ago
0
Fix orientation issue in perens lsfm atlas
#283
adamltyson
closed
1 month ago
0
perens_lsfm_mouse_20um_v1.1 is oriented incorrectly
#282
adamltyson
closed
1 month ago
1
perens_atlas alignment trouble with new version [BUG]
#281
pr4deepr
closed
1 month ago
4
[Feature] flexibly generate atlases with different resolutions
#280
alessandrofelder
opened
1 month ago
0
Add updated version of the kim atlas
#279
adamltyson
opened
1 month ago
1
[pre-commit.ci] pre-commit autoupdate
#278
pre-commit-ci[bot]
closed
1 month ago
0
Add cavefish atlas :fish:
#277
alessandrofelder
closed
1 week ago
1
Add cave fish atlas :fish:
#276
alessandrofelder
closed
1 month ago
1
validate_atlases.py additional_references error
#275
viktorpm
closed
1 month ago
5
deal with local and remote atlas versions in validate_atlases.py
#274
viktorpm
opened
1 month ago
9
Decide what to do with `atlas_generation/main_script`
#273
adamltyson
opened
1 month ago
1
run CI on both types of Mac
#272
alessandrofelder
closed
2 months ago
0
Fixes to Perens and Kim mouse atlases
#271
viktorpm
closed
1 month ago
8
[Feature] Add Ambystoma mexicanum (axolotl) atlas
#270
adamltyson
opened
2 months ago
0
add codecov token
#269
K-Meech
closed
2 months ago
0
[BUG] Hemisphere map not correctly set for mpin_zfish_1um_v1.0
#268
PolarBean
opened
2 months ago
2
[Feature] Are there plans for developing an online version of BrainGlobe-atlasapi?
#267
PolarBean
opened
2 months ago
3
[BUG] the link to documentation in your github description is broken
#266
PolarBean
closed
2 months ago
1
[BUG]Mesh issues with perens (20um) and kim (10um)
#265
pderdeyn
closed
1 month ago
4
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