-
Hi Jinghao,
Thank you so sharing this amazing pipeline for calcium imaging analysis. I git clone the Min1pipe package and run demo_min1pipe or min1pipe scripts, but both scripts throw with similar er…
-
Just saw this tweet announcing a human brain MRI at 100µm isotropic resolution. This could be a very cool dataset to use as a napari demo. I suggest we use this issue to keep track of datasets that we…
-
On the datashuttle/NWB roadmap we have this deliverable:
```
Support for customising data structure (e.g. specific mandatory elements or new file types)
```
The level of customisability is a g…
-
Working live script example including the following components:
- [ ] data access optimized for the DANDIHub compute environment (i.e., use a DANDIset via the pre-mounted S3 bucket)
- [ ] use of an …
-
I am training 2D nnUNet on medical imaging data with 6 class labels. The dataset consists of CT scans and the labels are segmentation masks for calcium in different arteries. I cross-check my data and…
-
Hello all. I have embarked on using CP for time series analysis in conjunction with multiple cell labels. I am working with hour long calcium imaging data with over 2000 objects per experiment. We …
-
Hi again.
Since we last spoke, I have been applying CASCADE to my two-photon Ca2+ imaging datasets and generally have been very pleased with the transformation of Ca2+ fluorescence traces into infe…
-
## 🚀 Feature
The problem, to quote @jni in #3848
> I have come to think that napari (and NumPy) in fact align the dimensions of the broadcasted arrays, ie the result of np.broadcast_to. In other wo…
-
### What format would you like to see added to NeuroConv?
We should be able to handle a directory of Tiff files that are single frames. This could be input either by a long list of files, or by the d…
-
We currently have a py module showing how to work with NWB. It would be good to put this in a notebook and explain things a bit more: this is where most of our foot traffic goes. I just made a draft o…