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I tried to run basic commands from README and [Documentation](https://cazy-webscraper.readthedocs.io/en/latest/pdb.html). As my primary goal is to retrieve the PDB files, I started creating a local da…
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**Are you using the latest release?**
yes
```
funannotate -version
funannotate v1.8.15
```
**Describe the bug**
When running funannotate annotate with external phobius, signalp, eggnog-emapp…
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**Are you using the latest release?**
Yes, w/ python 3.8.12
**Describe the bug**
Annotations don't seem to be adding (ex: diptera busco -> 0 annotations added), and some proteins are throwing err…
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**Are you using the latest release?**
Currently in 1.8.11
**Describe the bug**
`funannotate annotate` doesn't parse the COG annotations into the gbk file output if the input is a gbk file, but it…
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First I built the dabatase with:
`cazy_webscraper --classes AA`
Then I tried:
cw_get_uniprot_data --families AA17 -s
And I got this output:
```
Built output directory: .cazy_webscraper_…
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Funannotate has been pretty smooth so far, with good outputs to help me along the way when this do get off-track. But these issues kind of baffle me. Any recommendations to get `funannotate annotate` …
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## Describe the bug
When using `cw_get_uniprot_data` to retrieve data from UniProt, no data is retrieved and added to the local CAZyme database
## To Reproduce
1. Build a local CAZyme database:…
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**Are you using the latest release?** Yes
**Describe the bug**
I am missing the annotation of certain genes which seem to be not properly parsed by EggNog. Please any advice would be helpful I'm a…
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Hi again
I aim to annotate assembly metagenomic genes/contigs for CAZymes. I cannot find any documentation about what the differences are running with the option prok vs meta. When I run with meta I …
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Building a SMALL index
readline() on closed filehandle __IN at METABOLIC-C.pl line 1965.
rm: cannot remove '/mnt/f/METABOLIC/METABOLIC_test_files/METABOLIC_out/*.bam': No such file or directory
rm:…