-
I'd welcome a discussion about this issue. In the C++ custom.cpp, create_cell_types(), we define cell types' `functions`. But this assumes those cell types (beyond `cell_defaults`) have been defined, …
-
Hello,
Very interested in trying out Spacia, looks perfect for my use. I was wondering if you had worked with Giotto data in the past and had any wrapper script or code for quickly extracting the …
-
It would be nice to automate the standard QC plots. A single function could ingest cluster assignments, loglikelihoods, raw counts, umap coordinates, and xy positions, then output:
- cell types atop …
-
abnormal neuronal migration has 150+ direct annotations, need to review and see if we can create child terms
PMID:38331934 - reduced distance migrated
some existing annotations mention targeting…
-
@JABelfiore please review
**Preferred term label**
immune oligodendroglia
**Definition** (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
An oligodendrocyte of the centr…
-
First of all, thank you for developing this impressive toolkit. Much appreciated!
I encountered a problem when using scPoli for cell-type annotation. When I first trained the model on my reference …
-
I'd like to limit the expected_cell_types parameter in deconvolute_xcell(). It would be very helpful if it were easy to get a list of these cell types within immunedeconv.
-
Hi,
I've been using `scimilarity` to annotate cells in multiple different datasets. As a sanity check, I ran `scimilarity` on cells for which I already had cell type annotations performed with ano…
-
We seem to have one clique for `UMLS:C0225336` (Endothelial cells) and another for `CL:0000115` (Endothelial Cell). I suspect that this UMLS/CL split is happening for lots of cell types.
@gaurav i…
-
Need:
Exploring existent data to help identify key genomic, transcriptomic and/or proteomic differences between different movement-related disorders along with potential biomarkers that may aide in …