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Hello,
While working on https://github.com/geneontology/go-ontology/issues/15509
I came across some annotations that should be reviewed:
(incorrectly using the term OR could have a more specifi…
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* **PTHR ID & PTN node:**
GO:0003682 | chromatin binding | IBA with PTN001441502 , Q96DN6 , Q9P267
GO:0005634 | nucleus | IBA with Q9P267 , Q96DN6 , PTN001441502
* **Sequences with problema…
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* **Guidelines**
See http://wiki.geneontology.org/index.php/Guidelines_for_GO_textual_definitions#Use_genus-differentia_patterns_for_definitions
More details at https://douroucouli.wordpress.com/201…
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Hello,
I am trying to load an h5Ad file from scanpy v 1.4.6 to Seurat using Seurat disk. I did the following steps:
1. Convert scanpy to seurat
```
Convert(
source=scanpy_src,
des…
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How do we get GO Slim terms?
Here's a file of genes (DEGs that are shared between experiment A and B for sea star stuff):
[DEGlist_same_2021-2022_forGOslim.tab](https://github.com/grace-ac/pape…
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> Advanced machine learning models applied to large-scale genomics datasets hold the promise to be major drivers for genome science. Once trained, such models can serve as a tool to probe the relation…
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I ran HMMRATAC on two samples that should be biological replicates. The quality difference between them is high, although the quality is far from ideal for both. However, the low quality sample produc…
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We are working on annotation documentation for MF-to-BP relations and would like to assess the extent to which relations, other than 'part of', have been used to link MFs to BPs in Noctua.
We would…
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### Polaris version
dev
### Python Version
3.10
### Operating System
Linux
### Installation
pip
### Description
I'm trying to upload a zarr dataset. Not doing anything special as far as I can…