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I am annotating the fungal genome. Can the RNA fasta files from the same family in NCBI's Refseq be combined (redundant data) and then provided to the "funannotate predict --transcript_evidence" param…
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Once the track goes live, it'll be listed on https://exercism.org/challenges/48in24/implementation_status. Are there any of those exercises we can go ahead and marked foregone? Or just cross the bridg…
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Hi Jiarong
I am running into this issue when trying to run virsorter using your latest version:
(/home/leua/e/vs2) leua@cl5n008:~> virsorter run -w temp.virsorter -i temp_phage.fasta --min-leng…
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Hi it appears two scripts Circall_wt and Circall_bsj call within Circall_recount.sh are missing.
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Hello,
I am attempting to run compute_lineage_drivers(), but no matter what value I set for "lineages" I keep getting a value error.:
```
File "", line 421, in combined_kernel_analysis
File …
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**I have predicted circRNAs in my samples using find_circ and am using the CIRIquant command to requantify the predicted circRNAs. This has been mostly successful insofar, however, lately I have been …
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Here's my command:
```
(ratt_env) -bash-4.1$ RATT-with-GFF/RATTwithGFF.py Gene_Models/spp.gff3 Gene_Models/spp.scaffolds.fa Assemblies/Sch523_scaffolds.fasta refToQuery Strain
checking for valid…
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Hello,
first sample was done very well, but my second sample is stucking. My shell output is the following:
-1 SID16126_S10_L001_R1_001.fastq.gz -2 SID16126_S10_L001_R2_001.fastq.gz
[Wed 2022-0…
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- [ ] [accumulate \(deprecated)](https://github.com/exercism/problem-specifications/tree/main/exercises/accumulate)
- [x] [acronym](https://github.com/exercism/problem-specifications/tree/main/exerci…
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Are there plans to throw this on to Bioconda or your own conda channel?
Could be helpful for integrating this into existing pipelines. For example, I'm working on github.com/jolespin/veba and it…